PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057757001
Common NameGSBRNA2T00057757001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 1335aa    MW: 147778 Da    PI: 7.1597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057757001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-0613131334426
                           ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                           ++C+ f+++G+Ck G+ C+F H+
  GSBRNA2T00057757001 1313 KICK-FYESGYCKKGAACSFWHP 1334
                           6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.9E-779141IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.17E-782140IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.58286152IPR019787Zinc finger, PHD-finger
SMARTSM002491.6E-688134IPR001965Zinc finger, PHD-type
CDDcd155681.05E-1888133No hitNo description
PROSITE patternPS01359089149IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001513.5E-4292382IPR019835SWIB domain
SuperFamilySSF475928.07E-22301378IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.105.3E-24302382IPR003121SWIB/MDM2 domain
PfamPF022019.5E-15306377IPR003121SWIB/MDM2 domain
SMARTSM007191.3E-45436546IPR004343Plus-3 domain
PROSITE profilePS5136018.057436569IPR004343Plus-3 domain
SuperFamilySSF1590424.71E-25437560IPR004343Plus-3 domain
PfamPF031263.6E-17441544IPR004343Plus-3 domain
SuperFamilySSF552771.57E-15758814IPR003169GYF domain
CDDcd000725.55E-18761818No hitNo description
PROSITE profilePS5082915.192761815IPR003169GYF domain
SMARTSM004444.2E-14762817IPR003169GYF domain
Gene3DG3DSA:3.30.1490.405.6E-16763815IPR003169GYF domain
PfamPF022136.1E-11763807IPR003169GYF domain
SuperFamilySSF902291.57E-513091333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.81713091334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-413131333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1335 aa     Download sequence    Send to blast
MENQQLQQVP GEESSVKGVV DLMRVDQCEE EIGASQAPSV PAPTVAGVVD EAAPVKRKRG  60
RPPRAHAKTV SQTRPPPPPR KDEKEEDVCF ICFDGGDLVL CDRRNCPKAY HPACIKRDEA  120
FFRTAAKWNC GWHICGTCQK GSSYMCYTCT FSVCKRCIKD ADYVIVRGNM GLCGTCIKPI  180
MLIENISQGD NEAVKVDFDD KLSWEYLFKV YWLCLKEELS LTVEELTRAN NPWKEVPYTV  240
PKVESRNIHT LSKACSSGNS DSDVVANGTK RRRTSDSPTV PSKLDTKIPS NIPKKLPGDT  300
NWATKELLEF LSVMRNGDTS VLSQFDVQGL LLDYIKKKNL RDPNQKSQVV CDQMLVKLFE  360
RQRVGHFEML KLLESHFLIQ EKPKEEKPKN GESSHSVRSQ TEEDSAHDPV VRDRKRKMRR  420
KTDGSEKNEN LDAYAAIDVH NINLIYLRRK FIDTLLDDIN KVHEKVVGTI LRIKVSGSDQ  480
KLDIYRLVQV VGTSKASAFY QLGAKTTDVM LEILNLDKRE VISIDQLSDQ NVTEDECKRL  540
RQSIKCGLNK RLTVGDILKI AATLQVMRVN EVLEADILKL RHLRDRASEK GRRKEYPFFR  600
LPYYIYCTSL ALYLQIPCQS QRELLSLSSI QLYILKSFHL DFYTGCMEQK LGRLESPEER  660
QRLLQEVPEV HTDPSMDPSH PSAEDAVLGM RKPDNHIEVQ SKSPKKKGDI LNNLGNNPQK  720
KYDAPVLRSR KAMHATNKEE CSKVDNNSAD IQQTGKDDEE SEIWHYRDPA GKTQGPFSMV  780
QLRKWKSCGH FPPYLRIWKE HENQDESVLL TEALAGRFDK ATTLPSSSFH PQELKPSPHH  840
SGRTGVDVNC LQNNLKPVST SSTSSSSSIV TALPNDPKDK QVATLVPCSG KVEDGISVRP  900
QPQVSCPASM SVIPGHVVTP NVRETSGTDQ SSAVRPDGKT LEDGANSGSV SINGSVHAPN  960
LNQEIHFRDF PSPTPKSSPE DLEAQAAETI QSLSSCVLVK GPSGVTWSTT ATTTVDAPTT  1020
TTTSSVVVTG GQLPQVTQQS AVDLAAPSVK HIDLAADHAT ATHTSNNTHV AHSSGWPAIV  1080
ADPDECDESV SDLLAEVEAM EQNGLPSSPT STFHCDDDDD LMKGPEKDFF NPVLRMFLTH  1140
ETCRMNVSQP SILDYVSAGK SSTGAEAQAN THFSHCGTAG PELLLFAPPA PASTSQDLTL  1200
TTTALRLGSE TTVEAGLVER PPKYASGVGL EPSLRSPSSH DPARGNTERS PRGNGSQQKR  1260
SGGHSRDRQW WNNGHNNSLN NSHNNNRQWP YSSSHGYDHG SGSYTAHPPK GLKICKFYES  1320
GYCKKGAACS FWHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-12861551581Histone-lysine N-methyltransferase NSD3
4gnd_C1e-12861551581Histone-lysine N-methyltransferase NSD3
4gne_A1e-12861551581Histone-lysine N-methyltransferase NSD3
4gnf_A1e-12861551581Histone-lysine N-methyltransferase NSD3
4gng_A1e-12861551581Histone-lysine N-methyltransferase NSD3
4gng_D1e-12861551581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057757001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895080.0AC189508.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013662991.10.0zinc finger CCCH domain-containing protein 44-like isoform X1
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A078JMI90.0A0A078JMI9_BRANA; BnaC08g48800D protein
STRINGBo8g081870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]