PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00057470001

Common Name

GSBRNA2T00057470001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-X1

Protein Properties

Length: 892aa MW: 97770.8 Da PI: 8.0916

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00057470001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	21.2	6.1e-07	163	181	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++ CH G+C pC+ GSBRNA2T00057470001 163 CGRHRCERSCHVGNCEPCQ 181 ******************6 PP
2	zf-NF-X1	17.1	1.2e-05	227	244	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++ CH GpC+ C GSBRNA2T00057470001 227 CGNHLCSEVCHAGPCGDC 244 ****************99 PP
3	zf-NF-X1	24.6	5.5e-08	286	303	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C + CH G+CppC GSBRNA2T00057470001 286 CGLHTCAEVCHSGDCPPC 303 ****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd06008	1.40E-5	89	146	No hit	No description
SMART	SM00438	0.023	108	126	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	6.5	110	125	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	8.88E-10	153	201	No hit	No description
Pfam	PF01422	1.9E-5	163	180	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	3.7E-4	163	182	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	6.08E-8	217	262	No hit	No description
Pfam	PF01422	1.7E-4	227	244	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	6.7E-4	227	246	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	4.37E-12	276	323	No hit	No description
Pfam	PF01422	4.6E-7	286	303	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	3.3E-6	286	305	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.049	342	352	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	24	342	368	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	1.12E-6	362	414	No hit	No description
Pfam	PF01422	0.0086	366	389	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.017	372	391	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	1.46E-5	419	466	No hit	No description
Pfam	PF01422	23	429	446	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.079	429	447	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.033	482	497	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.036	482	513	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	12	515	541	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.051	522	543	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01424	4.1E-5	646	711	IPR001374	R3H domain
Gene3D	G3DSA:3.30.70.330	0.001	764	803	IPR012677	Nucleotide-binding alpha-beta plait domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000166	Molecular Function	nucleotide binding
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MICYDKVIRS ANIWSCSSCY SIFHMHCIKR WARAPTSIDL SAEKNQGDNW RCPGCQSVQL 60 TSSREISYRC FCGKRKDPPS DPYLTPHSCG EPCGKPLEKD FAAKEDLCPH VCVLQCHPGP 120 CPPCKAFAPP RSCPCGKKMF HTRCSERRSL LVCSQRCEKL LSCGRHRCER SCHVGNCEPC 180 QVLVTATCFC KKKVESFVCG DVNVKGELKV EDGVYTCNLK CGKRLGCGNH LCSEVCHAGP 240 CGDCDLLPSR VKTCYCGRTQ LEEQIRGSCL DPVPSCSNVC LKLLPCGLHT CAEVCHSGDC 300 PPCLVQVNQK CRCESTSRTV ECYITTSSEF VCVKPCGRKK NCGRHRCSKR CHLSSDLDTH 360 LCQLPCGKNL RCLQHSCESL CHSGHCPPCF EVIFTDLTCA CGRASIPPPL PCGTPVPTCQ 420 LPCSVPQPCG HSATHGCHFG DCPPCSAPVE KKCVGGHVVL RNIPCGLRDI KCNKVCGKTR 480 RCGMHACARA CHLEPCDTYS ESEAGLRVVT CGQTCGAPRR DCKHTCASLC HPSQPCPDSR 540 CEFPVTITCS CGRITATVPC DAGSNLRVES LYEASVLQKL PTTLQRVESS GNRIPLGQRK 600 LSCDDECVKL ERKRVDITPL NLDYVHFSEN SAMTEIISDI YRRDPKWVLA VEERFKLLVL 660 GKARGSVSSV IKVHVFCPMQ KDKRDTVRLL AERWKLAVKN AGWEPKRFTV VHVTQKSKPP 720 TRIIGARGSE GGPHPPCFDP VVDMDPRLVV SLLDLPREVN VNALVLRFGG ECVLVWLNDK 780 NALVVFHDHA RAATAMRRLD HASVYHGAVA VQNGSQSPSL GNTMGSSSCD AQKANPWKKA 840 VIQESDDETW GAEDSSIRGS STDIQASTWR SATSNTPTLT SVNCWSVLEP E*

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MICYDKVIRS ANIWSCSSCY SIFHMHCIKR WARAPTSIDL SAEKNQGDNW RCPGCQSVQL  60
TSSREISYRC FCGKRKDPPS DPYLTPHSCG EPCGKPLEKD FAAKEDLCPH VCVLQCHPGP  120
CPPCKAFAPP RSCPCGKKMF HTRCSERRSL LVCSQRCEKL LSCGRHRCER SCHVGNCEPC  180
QVLVTATCFC KKKVESFVCG DVNVKGELKV EDGVYTCNLK CGKRLGCGNH LCSEVCHAGP  240
CGDCDLLPSR VKTCYCGRTQ LEEQIRGSCL DPVPSCSNVC LKLLPCGLHT CAEVCHSGDC  300
PPCLVQVNQK CRCESTSRTV ECYITTSSEF VCVKPCGRKK NCGRHRCSKR CHLSSDLDTH  360
LCQLPCGKNL RCLQHSCESL CHSGHCPPCF EVIFTDLTCA CGRASIPPPL PCGTPVPTCQ  420
LPCSVPQPCG HSATHGCHFG DCPPCSAPVE KKCVGGHVVL RNIPCGLRDI KCNKVCGKTR  480
RCGMHACARA CHLEPCDTYS ESEAGLRVVT CGQTCGAPRR DCKHTCASLC HPSQPCPDSR  540
CEFPVTITCS CGRITATVPC DAGSNLRVES LYEASVLQKL PTTLQRVESS GNRIPLGQRK  600
LSCDDECVKL ERKRVDITPL NLDYVHFSEN SAMTEIISDI YRRDPKWVLA VEERFKLLVL  660
GKARGSVSSV IKVHVFCPMQ KDKRDTVRLL AERWKLAVKN AGWEPKRFTV VHVTQKSKPP  720
TRIIGARGSE GGPHPPCFDP VVDMDPRLVV SLLDLPREVN VNALVLRFGG ECVLVWLNDK  780
NALVVFHDHA RAATAMRRLD HASVYHGAVA VQNGSQSPSL GNTMGSSSCD AQKANPWKKA  840
VIQESDDETW GAEDSSIRGS STDIQASTWR SATSNTPTLT SVNCWSVLEP E*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.15008	1e-176	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269\|PubMed:16905136}.

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269\|PubMed:16905136, ECO:0000269\|PubMed:18069941, ECO:0000269\|PubMed:19704430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00057470001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269\|PubMed:16905136, ECO:0000269\|PubMed:18069941, ECO:0000269\|PubMed:19704430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013716091.1	0.0	NF-X1-type zinc finger protein NFXL1-like
Swissprot	Q9SY59	0.0	NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBL	A0A078HB10	0.0	A0A078HB10_BRANA; BnaA09g48270D protein
STRING	Bra031704.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5955	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X-like 1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]