PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00057270001 | ||||||||
Common Name | GSBRNA2T00057270001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20462.4 Da PI: 7.7579 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.6 | 2.2e-29 | 4 | 103 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ GSBRNA2T00057270001 4 SCNGCRVLRKGCSDDCSIRPCLgwiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNW 93 6***************************************************************************************** PP DUF260 86 qleqlkaela 95 ql+q++a + GSBRNA2T00057270001 94 QLCQAAASHH 103 ****998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.189 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.9E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDDCS IRPCLGWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAA SHHSSLSHQS EVVVAPHEGE 120 SKETESNNSE VMTFSPPAVQ GSGEIKLDLT LGLEPVSRAD HVVPVKKRKM GVFSTWQEES 180 SCKTDLVL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.2282 | 1e-147 | seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00057270001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY208877 | 1e-144 | AY208877.1 Brassica napus seed specific protein Bn15D17A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002887102.1 | 6e-71 | LOB domain-containing protein 40 | ||||
Swissprot | Q9ZW96 | 1e-69 | LBD40_ARATH; LOB domain-containing protein 40 | ||||
TrEMBL | A0A078H891 | 1e-137 | A0A078H891_BRANA; BnaA01g32900D protein | ||||
STRING | Al_scaffold_0002_1337 | 2e-70 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 7e-67 | LOB domain-containing protein 41 |
Publications ? help Back to Top | |||
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