PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057212001
Common NameGSBRNA2T00057212001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 338aa    MW: 37797.1 Da    PI: 6.7373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057212001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+ ++++ G g+W++ +++ g+ R++k+c++rw +yl
  GSBRNA2T00057212001 14 KGPWTPEEDQKLLAYIEENGHGSWRSLPEKAGLQRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding50.64.4e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T +E++ +++++++lG++ W++Ia ++  +Rt++++k++w+++l
  GSBRNA2T00057212001  67 RGKFTVQEEQTIIQLHALLGNR-WSAIATHLA-KRTDNEIKNYWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.008961IPR017930Myb domain
SuperFamilySSF466891.47E-2911108IPR009057Homeodomain-like
SMARTSM007172.0E-131363IPR001005SANT/Myb domain
PfamPF002495.7E-161461IPR001005SANT/Myb domain
CDDcd001672.31E-101661No hitNo description
PROSITE profilePS5129425.94462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-2665117IPR009057Homeodomain-like
SMARTSM007171.7E-1666114IPR001005SANT/Myb domain
PfamPF002492.9E-1567112IPR001005SANT/Myb domain
CDDcd001676.38E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRSPCCDKA GLKKGPWTPE EDQKLLAYIE ENGHGSWRSL PEKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF TVQEEQTIIQ LHALLGNRWS AIATHLAKRT DNEIKNYWNT HLKKRLVKMG  120
IDPVTHKHKN ETLMSSTGQS KSAAATLSHM AQWESARLEA EARLARESKL LHYQNNKAAA  180
PNHCLSHKAS STNWTKPNQG KGDQQLESPT STVTFSENLH LMIMPSGENN NESSEIQNMT  240
EFALSSSTSS DVKDSDQDWM RQINCPAEGI EEGFTSLLLL GDSGDRSLSI GKKDEETVAG  300
AVEVNESDYS YYEDNKNYWN SILNLVDSTP SDSSTMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057212001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667330.0KC966733.1 Brassica napus MYB transcription factor 106 (MYB106.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302471.10.0transcription factor MYB34-like
SwissprotQ9LE631e-180MY106_ARATH; Transcription factor MYB106
TrEMBLA0A078HAH40.0A0A078HAH4_BRANA; BnaA01g33290D protein
STRINGBra021483.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-152myb domain protein 106
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]