PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00056696001
Common NameGSBRNA2T00056696001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family STAT
Protein Properties Length: 647aa    MW: 72882.3 Da    PI: 4.7059
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00056696001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT177.81.6e-552243411118
                 STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 
                          ldvvl+na+gqpv+kdv+vvasLlya+sg++vek++d eapLL+sydGvefs+ed+p+ ll+G+as+klkisq  skcd+rLf+ikfeip
  GSBRNA2T00056696001 224 LDVVLSNAIGQPVRKDVQVVASLLYANSGTPVEKTSDLEAPLLVSYDGVEFSAEDKPCTLLNGCASLKLKISQHYSKCDKRLFCIKFEIP 313
                          8***************************************************************************************** PP

                 STAT  91 klkkypfleavskpirCisrsrntrsss 118
                          +   ypflea+++++rCisr+ +  s+s
  GSBRNA2T00056696001 314 NKGCYPFLEAFTNQMRCISRTASDSSLS 341
                          ********************98766554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2006.9E-525149IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF133859.4E-727149No hitNo description
SuperFamilySSF498993.33E-829166IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103386.92E-65546646No hitNo description
SuperFamilySSF555501.81E-11554641IPR000980SH2 domain
Gene3DG3DSA:3.30.505.109.1E-8554604IPR000980SH2 domain
PROSITE profilePS5000110.048557610IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MADGCALDTE KYSLLEDFNV DVEVEKQEFE TFSLCFWVYL LDSTTYPSTI IRQVHSDMSF  60
SAPFLVLDEN KKMILLPLTL LHKEAPDPVN TASWTEVPNV STTAEFPLQR WVHVGCEVSR  120
NYMRLYICGK MVGEKLLTSV MTNGTNSDNV RRVSLFSVGG DGYSVQGFIH CGEVLPSTVH  180
VNNHYTKDPP LWLSVEKPST CEVDEDGVWS IVGEKASCGM IFSLDVVLSN AIGQPVRKDV  240
QVVASLLYAN SGTPVEKTSD LEAPLLVSYD GVEFSAEDKP CTLLNGCASL KLKISQHYSK  300
CDKRLFCIKF EIPNKGCYPF LEAFTNQMRC ISRTASDSSL SMKRIKFGEE KIPESEFEGG  360
NGTSMAWGPQ NQDEEEEEEE EDQSSTDSDN TEVRGSTGSR GYTISDSTIF KYCLGNLTER  420
SLIMKEITNN AGDEEVSEFA DQVSLYSGCS HHGYQIKMAR KLIAEGTNAW ILISRNYQNV  480
HWDNVVIEIE EHFMRIAKCS SRSLTHQDFE LLRRICGCYD YITQENFEKM WCWLFPVATS  540
ISRGLINGMW RSCSPKWIEG FVTKEEAEHS LQSQEPGTFI LRFPTSRSWP HPDAGSLVVT  600
YVGRDFVIRH RLLAVDHICD SSERYTDAKP LQDMLLAEPE LSRLGR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00056696001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641602.10.0SH2 domain-containing protein A-like
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLA0A078JNC00.0A0A078JNC0_BRANA; BnaAnng23100D protein
STRINGBo5g022370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]