PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00056696001 | ||||||||
Common Name | GSBRNA2T00056696001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | STAT | ||||||||
Protein Properties | Length: 647aa MW: 72882.3 Da PI: 4.7059 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 177.8 | 1.6e-55 | 224 | 341 | 1 | 118 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 ldvvl+na+gqpv+kdv+vvasLlya+sg++vek++d eapLL+sydGvefs+ed+p+ ll+G+as+klkisq skcd+rLf+ikfeip GSBRNA2T00056696001 224 LDVVLSNAIGQPVRKDVQVVASLLYANSGTPVEKTSDLEAPLLVSYDGVEFSAEDKPCTLLNGCASLKLKISQHYSKCDKRLFCIKFEIP 313 8***************************************************************************************** PP STAT 91 klkkypfleavskpirCisrsrntrsss 118 + ypflea+++++rCisr+ + s+s GSBRNA2T00056696001 314 NKGCYPFLEAFTNQMRCISRTASDSSLS 341 ********************98766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 6.9E-5 | 25 | 149 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Pfam | PF13385 | 9.4E-7 | 27 | 149 | No hit | No description |
SuperFamily | SSF49899 | 3.33E-8 | 29 | 166 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
CDD | cd10338 | 6.92E-65 | 546 | 646 | No hit | No description |
SuperFamily | SSF55550 | 1.81E-11 | 554 | 641 | IPR000980 | SH2 domain |
Gene3D | G3DSA:3.30.505.10 | 9.1E-8 | 554 | 604 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.048 | 557 | 610 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MADGCALDTE KYSLLEDFNV DVEVEKQEFE TFSLCFWVYL LDSTTYPSTI IRQVHSDMSF 60 SAPFLVLDEN KKMILLPLTL LHKEAPDPVN TASWTEVPNV STTAEFPLQR WVHVGCEVSR 120 NYMRLYICGK MVGEKLLTSV MTNGTNSDNV RRVSLFSVGG DGYSVQGFIH CGEVLPSTVH 180 VNNHYTKDPP LWLSVEKPST CEVDEDGVWS IVGEKASCGM IFSLDVVLSN AIGQPVRKDV 240 QVVASLLYAN SGTPVEKTSD LEAPLLVSYD GVEFSAEDKP CTLLNGCASL KLKISQHYSK 300 CDKRLFCIKF EIPNKGCYPF LEAFTNQMRC ISRTASDSSL SMKRIKFGEE KIPESEFEGG 360 NGTSMAWGPQ NQDEEEEEEE EDQSSTDSDN TEVRGSTGSR GYTISDSTIF KYCLGNLTER 420 SLIMKEITNN AGDEEVSEFA DQVSLYSGCS HHGYQIKMAR KLIAEGTNAW ILISRNYQNV 480 HWDNVVIEIE EHFMRIAKCS SRSLTHQDFE LLRRICGCYD YITQENFEKM WCWLFPVATS 540 ISRGLINGMW RSCSPKWIEG FVTKEEAEHS LQSQEPGTFI LRFPTSRSWP HPDAGSLVVT 600 YVGRDFVIRH RLLAVDHICD SSERYTDAKP LQDMLLAEPE LSRLGR* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00056696001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013641602.1 | 0.0 | SH2 domain-containing protein A-like | ||||
Swissprot | B5X561 | 0.0 | SHA_ARATH; SH2 domain-containing protein A | ||||
TrEMBL | A0A078JNC0 | 0.0 | A0A078JNC0_BRANA; BnaAnng23100D protein | ||||
STRING | Bo5g022370.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17040.1 | 0.0 | SH2 domain protein A |
Publications ? help Back to Top | |||
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