PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00056417001 | ||||||||
Common Name | GSBRNA2T00056417001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 597aa MW: 66394.5 Da PI: 5.2318 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.7 | 5.6e-15 | 407 | 454 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h Er+RR+++N++f +Lr+++P+ + K +K++iL ++eY+++Lq GSBRNA2T00056417001 407 ANHALSERKRREKLNDRFMTLRSMIPSiS------KIDKVSILDDTIEYLQELQ 454 58999**********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.6E-53 | 13 | 202 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.193 | 404 | 453 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-19 | 406 | 473 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-12 | 407 | 454 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.41E-16 | 408 | 458 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-18 | 408 | 472 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-17 | 410 | 459 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MAAVENRMVP ENLKKHLAVS VRNIQWSYGI FWSVSASQPG LLEWGDGYYN GDIKTRKTVQ 60 ASQVKADQLG LERSEQLREL YESLSLAESS TSCGSQVTRR ASAASLSPED LTDTEWFYLV 120 CMSFVFNIGE GIPGGALANG QPIWLCNAHT ADSKVFTRSL LAKSASLLTV VCFPFLGGVL 180 EIGTTEHVAE NLNVIQCVKT LFLEAPHGTL SARSDYQEIF EPLSNDKYIP VFETEAFPTT 240 STSVYEQEPD DHDSFINGGG ASQVQSWQFV GEELSNCLHQ PLNSSDCVSQ TFVGATGRVS 300 CGPRKSKSQR LGQIQEQSNR VNMDDDVHYQ GVISTIFKTT HQLILGPQFH NFDKRSSFTR 360 WRRSSSSAKS LGEKSQNMLN KIVFEVPRMH QKDTPEDSGY KVGDETANHA LSERKRREKL 420 NDRFMTLRSM IPSISKIDKV SILDDTIEYL QELQRRVQEL ESCRESTDTE MRMAMKRKKP 480 DGEDESASAN CLNNKRKESD IGEDEPADTG YAGLTDNLRI GSFGNEVVIE LRCAWREGIL 540 LEIMDVISDL NLDSHSVQSS TGDGLLCLTV NCKHKGTKIA TTGMIQDALQ RVAWIC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-15 | 26 | 202 | 24 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-15 | 26 | 202 | 24 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-15 | 26 | 202 | 24 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-15 | 26 | 202 | 24 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 412 | 417 | ERKRRE |
2 | 413 | 418 | RKRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Localized in trichome developing region of leaves, prior to trichome initiation. Levels increase in initiating and young trichome cells, but dropped in the pavement cells between trichomes. Disappears in mature trichomes. {ECO:0000269|PubMed:12917293}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous with higher levels in buds and flowers. Specifically localized in developing root hair cells. Expressed in epidermal root hair cells (trichoblasts) and moves to root hairless cells (atrichoblasts) by a cell-to-cell movement through plasmodesmata (at protein level). {ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15590742}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation but promotes trichome formation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Involved in seed mucilage production. Activates the transcription of GL2. {ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00056417001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. Negatively regulated by MYB66/WER, GL3 and BHLH2 in the developing non-hair cells, and positively regulated by CPC and TRY in the developing hair cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15590742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM208589 | 0.0 | HM208589.1 Brassica rapa subsp. rapa cultivar 'Tsuda' enhancer of glabra 3 (EGL3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013721039.1 | 0.0 | transcription factor EGL1-like | ||||
Swissprot | Q9CAD0 | 0.0 | EGL1_ARATH; Transcription factor EGL1 | ||||
TrEMBL | A0A078H9M5 | 0.0 | A0A078H9M5_BRANA; BnaA09g11090D protein | ||||
STRING | Bra027653.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2592 | 28 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 0.0 | bHLH family protein |