PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00056044001
Common NameGSBRNA2T00056044001, LOC106422041
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 182aa    MW: 19792.5 Da    PI: 10.2716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00056044001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-191160255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a++ l+g
  GSBRNA2T00056044001 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARFLRG 60
                         6********.**********883....5***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-131160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-311168IPR001471AP2/ERF domain
SMARTSM003803.0E-341174IPR001471AP2/ERF domain
CDDcd000183.32E-281168No hitNo description
PROSITE profilePS5103222.4051168IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-221169IPR016177DNA-binding domain
PRINTSPR003675.3E-111223IPR001471AP2/ERF domain
PRINTSPR003675.3E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MASTTCGKEV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG  60
IKAKTNFPSP LSLDLNHIPS PSAAAAAPDN HHNHQLWFSA PPPPPPPLHI PGNYRHHGLY  120
LRTGVLNGRT PSTEAPLYFA ASPAAATSSP RVLELLSSSP SSPTARRGLA IDLNEPPPLW  180
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21868263ATERF1
3gcc_A9e-21868263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00056044001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0558833e-85AB055883.1 Arabidopsis thaliana AtERF12 gene for ERF domain protein12, complete cds.
GenBankAC0101553e-85AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankAY0997983e-85AY099798.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds.
GenBankBT0026043e-85BT002604.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds.
GenBankCP0026843e-85CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013718318.11e-128ethylene-responsive transcription factor 12
SwissprotQ94ID69e-81ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A078H9301e-127A0A078H930_BRANA; BnaA09g27330D protein
TrEMBLA0A3P5YJV11e-127A0A3P5YJV1_BRACM; Uncharacterized protein
STRINGBra032898.1-P1e-125(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-67ERF domain protein 12
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]