PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00056041001 | ||||||||
Common Name | GSBRNA2T00056041001, LOC106422056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 17276.5 Da PI: 10.7661 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.8 | 1.3e-13 | 25 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ rgr++AeIrdp++ ++r++lg t+e Aa+a+++a+ +++g GSBRNA2T00056041001 25 RYRGVRKRP-RGRYAAEIRDPVQ---KARVWLG---TPEAAARAYDKAAVAFRG 71 7********.8*********754...5****77...9************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-24 | 25 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.94E-17 | 25 | 79 | No hit | No description |
SMART | SM00380 | 1.7E-26 | 25 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-16 | 25 | 79 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.1E-7 | 25 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.162 | 25 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 61 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MAPPTTGKTA AVKTNNSDGG KKENRYRGVR KRPRGRYAAE IRDPVQKARV WLGTPEAAAR 60 AYDKAAVAFR GAKAQTNFPR PSLVDNESPN QSSTVGSSST ITNLNLDTRF PFPKIQVKSG 120 MMVIEESEAS SVVMDRSPQK PSRVPLDFDL NFPPTPDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-15 | 22 | 79 | 2 | 63 | ATERF1 |
3gcc_A | 5e-15 | 22 | 79 | 2 | 63 | ATERF1 |
5wx9_A | 6e-15 | 20 | 80 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00056041001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013718329.1 | 1e-112 | ethylene-responsive transcription factor 11 | ||||
Swissprot | Q9C5I3 | 5e-45 | ERF76_ARATH; Ethylene-responsive transcription factor 11 | ||||
TrEMBL | A0A078H6B6 | 1e-111 | A0A078H6B6_BRANA; BnaA09g27310D protein | ||||
STRING | Bra032900.1-P | 2e-95 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 6e-29 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Entrez Gene | 106422056 |
Publications ? help Back to Top | |||
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