PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00056030001 | ||||||||
Common Name | GSBRNA2T00056030001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HB-other | ||||||||
Protein Properties | Length: 1666aa MW: 186652 Da PI: 5.066 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.1 | 1.3e-17 | 40 | 96 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ ql++Le+++ + yps+++r+eL++kl+L++rq ++WF+ rR k+kk GSBRNA2T00056030001 40 PKRQMKTPFQLQTLEQVYSAeETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK 96 69*****************88**********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-15 | 19 | 96 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.75E-14 | 31 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.775 | 36 | 97 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.2E-16 | 38 | 101 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.8E-15 | 40 | 96 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.23E-13 | 41 | 96 | No hit | No description |
PROSITE profile | PS50827 | 17.838 | 540 | 599 | IPR018501 | DDT domain |
SMART | SM00571 | 1.6E-23 | 540 | 599 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.3E-18 | 541 | 596 | IPR018501 | DDT domain |
Pfam | PF05066 | 4.2E-15 | 722 | 789 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 4.0E-7 | 919 | 961 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 3.8E-13 | 1070 | 1142 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1666 aa Download sequence Send to blast |
MESDGEENQM RSVADSNHKN KKMKKVVDAS NSKDSPSSKP KRQMKTPFQL QTLEQVYSAE 60 ETYPSEATRA ELSEKLDLSD RQLQMWFCHR RLKDKKDGQV KKTPKPAPVQ PASAVPALSL 120 PAAELDSGSD SGSGSGSGSG CSPYSEPRRE FASGSSNSRA EYETMGSAGY EQPPPRSSVM 180 VRRAVACIEA QLGEPLRDDG PTLGMEFDPL PPGAFGTPIA MQTHQGHPYE SKMYEPLDVR 240 PRRSQAATSA FHEQQSLNDP SSFTPDMYGR YSESHSRGVD YEISRPRSSS FMQGNGPLPK 300 SYGNSSRNCS TSQQDMPSPI LPSARGDSFL LERDSSGLRA EDPYLLSDGV RMSNDVHRKG 360 KINDGRLGRG SGQKDLEKLE LQRKRNEERM RKEMERYERE RRKEEERLMR ERIKEEERLQ 420 REQRREMERR EKFLQRENER AEKNKQKEEI RREKEAIRRK IAVEKATARR IAKEAMDLIE 480 DEQLELMDLA ASSKGLSSVI QLDHDTLQNL DLYRDSLSTF PPKALQLKMP FTISPWKDSK 540 ENVGNLLMVW RFLISFSDVL DLWPFTLDEF IQALHEYDSR LLGEIHITLL RSIIRDIEDV 600 ARTPYSGIGN NQYTTANPEG GHPQIVEGAY AWGFDIRSWK KHLNPLTWPE ILRQLGLSSG 660 FGPRLKKSNS RVTHTGEKDE AKGCEDIIST LRSGSAAESA FASMLEKGLL APRKSRHRLT 720 PGTVKFAAFH VLSLEGSKGL TVIELADKIQ KSGLRDLRTS KTPEASISVA LTRDVKLFER 780 IAPSTYCVRA PYVKDPADGE AILAEARKKI KAFENGLAGP EDVNDLEKDE DFECDIDEDP 840 EVDDLATLPS ASKSADLGDA NGLSEKGGEI MFSDVKADVK SEVEKGVSSP PTSSMKSIVP 900 QCHSEQRKDN AVVEDSKQGK SWVLGLTEGE YCHLSVEERL EALVALVGIA NEGNSIRASL 960 EDRLEAANSL KKQMWAEAQL DNSCMRDVLK FDIQNSTREI NSFNRDPSQL VDETKPPLEV 1020 VSNDVHKLST ERGSVNQEGN ISQENFSSKR SRSQLKSYIS HKAEEVYPYR SLPLGQDRRH 1080 NRYWHFAASA SKSDPCSGLI FVELHDSKWR LIDSAEAFDT LVASLDMRGV RESHLRIMLQ 1140 KIEGAFKENA SKNINLARNP SLKEDSVSPS SAILGLSSDS MGASTSIRVE LGRDDKEKEN 1200 FLKRFHAFQR WMWTETYSSV PSCARKDGKK RCELLATCEV CIASYLSEYT HCISCHQRLD 1260 MADGSERKIV DSGLTASPLP FGVRLLKALL VFLEASVPDE AFESFWTEEK RKNWGLKLNA 1320 SSSPEELSQV LTYLESAIKK ESLSSNFLSA KELLGAAGAD DQESMDVFPW IPKTVSAVAL 1380 RLSDLDASIV YVKPEKPEPV PEDENEQISL FPGNSLLKGK GPKEQEDQDE VVPNSGKKSN 1440 KRRVIFGSGS NKKAKKKKVQ GGNGRFVAGR SNVAASRNIM SVELNHQVPG RGKRTVRKRP 1500 ERNDEDNYRL VSRMADIVKP TSEEDEEEEE EQTFRGIDED WAGETPREMD EEWASETPNR 1560 VMTPMQVDGE SDDNSVGVQS EDDDDDEGQF VSYSQRNKWG FDWNSNPNEA MEDVEEEVAG 1620 VEQVQREYVA EMSESSEDDD VPAANNNAAA NNYDRESEDY SSSDS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 96 | RRLKDKKD |
2 | 1440 | 1457 | KRRVIFGSGSNKKAKKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.28163 | 0.0 | flower| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00056030001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013718334.1 | 0.0 | homeobox-DDT domain protein RLT1-like isoform X1 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A078H9E7 | 0.0 | A0A078H9E7_BRANA; BnaA09g27250D protein | ||||
STRING | Bra032908.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8347 | 22 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |
Publications ? help Back to Top | |||
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