PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00056030001
Common NameGSBRNA2T00056030001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 1666aa    MW: 186652 Da    PI: 5.066
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00056030001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-174096257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                          kR+  t+ ql++Le+++   + yps+++r+eL++kl+L++rq ++WF+ rR k+kk
  GSBRNA2T00056030001 40 PKRQMKTPFQLQTLEQVYSAeETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK 96
                         69*****************88**********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-151996IPR009057Homeodomain-like
SuperFamilySSF466891.75E-143196IPR009057Homeodomain-like
PROSITE profilePS5007115.7753697IPR001356Homeobox domain
SMARTSM003898.2E-1638101IPR001356Homeobox domain
PfamPF000462.8E-154096IPR001356Homeobox domain
CDDcd000867.23E-134196No hitNo description
PROSITE profilePS5082717.838540599IPR018501DDT domain
SMARTSM005711.6E-23540599IPR018501DDT domain
PfamPF027911.3E-18541596IPR018501DDT domain
PfamPF050664.2E-15722789IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156124.0E-7919961IPR028942WHIM1 domain
PfamPF156133.8E-1310701142IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1666 aa     Download sequence    Send to blast
MESDGEENQM RSVADSNHKN KKMKKVVDAS NSKDSPSSKP KRQMKTPFQL QTLEQVYSAE  60
ETYPSEATRA ELSEKLDLSD RQLQMWFCHR RLKDKKDGQV KKTPKPAPVQ PASAVPALSL  120
PAAELDSGSD SGSGSGSGSG CSPYSEPRRE FASGSSNSRA EYETMGSAGY EQPPPRSSVM  180
VRRAVACIEA QLGEPLRDDG PTLGMEFDPL PPGAFGTPIA MQTHQGHPYE SKMYEPLDVR  240
PRRSQAATSA FHEQQSLNDP SSFTPDMYGR YSESHSRGVD YEISRPRSSS FMQGNGPLPK  300
SYGNSSRNCS TSQQDMPSPI LPSARGDSFL LERDSSGLRA EDPYLLSDGV RMSNDVHRKG  360
KINDGRLGRG SGQKDLEKLE LQRKRNEERM RKEMERYERE RRKEEERLMR ERIKEEERLQ  420
REQRREMERR EKFLQRENER AEKNKQKEEI RREKEAIRRK IAVEKATARR IAKEAMDLIE  480
DEQLELMDLA ASSKGLSSVI QLDHDTLQNL DLYRDSLSTF PPKALQLKMP FTISPWKDSK  540
ENVGNLLMVW RFLISFSDVL DLWPFTLDEF IQALHEYDSR LLGEIHITLL RSIIRDIEDV  600
ARTPYSGIGN NQYTTANPEG GHPQIVEGAY AWGFDIRSWK KHLNPLTWPE ILRQLGLSSG  660
FGPRLKKSNS RVTHTGEKDE AKGCEDIIST LRSGSAAESA FASMLEKGLL APRKSRHRLT  720
PGTVKFAAFH VLSLEGSKGL TVIELADKIQ KSGLRDLRTS KTPEASISVA LTRDVKLFER  780
IAPSTYCVRA PYVKDPADGE AILAEARKKI KAFENGLAGP EDVNDLEKDE DFECDIDEDP  840
EVDDLATLPS ASKSADLGDA NGLSEKGGEI MFSDVKADVK SEVEKGVSSP PTSSMKSIVP  900
QCHSEQRKDN AVVEDSKQGK SWVLGLTEGE YCHLSVEERL EALVALVGIA NEGNSIRASL  960
EDRLEAANSL KKQMWAEAQL DNSCMRDVLK FDIQNSTREI NSFNRDPSQL VDETKPPLEV  1020
VSNDVHKLST ERGSVNQEGN ISQENFSSKR SRSQLKSYIS HKAEEVYPYR SLPLGQDRRH  1080
NRYWHFAASA SKSDPCSGLI FVELHDSKWR LIDSAEAFDT LVASLDMRGV RESHLRIMLQ  1140
KIEGAFKENA SKNINLARNP SLKEDSVSPS SAILGLSSDS MGASTSIRVE LGRDDKEKEN  1200
FLKRFHAFQR WMWTETYSSV PSCARKDGKK RCELLATCEV CIASYLSEYT HCISCHQRLD  1260
MADGSERKIV DSGLTASPLP FGVRLLKALL VFLEASVPDE AFESFWTEEK RKNWGLKLNA  1320
SSSPEELSQV LTYLESAIKK ESLSSNFLSA KELLGAAGAD DQESMDVFPW IPKTVSAVAL  1380
RLSDLDASIV YVKPEKPEPV PEDENEQISL FPGNSLLKGK GPKEQEDQDE VVPNSGKKSN  1440
KRRVIFGSGS NKKAKKKKVQ GGNGRFVAGR SNVAASRNIM SVELNHQVPG RGKRTVRKRP  1500
ERNDEDNYRL VSRMADIVKP TSEEDEEEEE EQTFRGIDED WAGETPREMD EEWASETPNR  1560
VMTPMQVDGE SDDNSVGVQS EDDDDDEGQF VSYSQRNKWG FDWNSNPNEA MEDVEEEVAG  1620
VEQVQREYVA EMSESSEDDD VPAANNNAAA NNYDRESEDY SSSDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18996RRLKDKKD
214401457KRRVIFGSGSNKKAKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.281630.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00056030001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013718334.10.0homeobox-DDT domain protein RLT1-like isoform X1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A078H9E70.0A0A078H9E7_BRANA; BnaA09g27250D protein
STRINGBra032908.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83472236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]