PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00055870001 | ||||||||
Common Name | GSBRNA2T00055870001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 194aa MW: 23068.4 Da PI: 8.4133 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.2 | 3.7e-10 | 119 | 154 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ GSBRNA2T00055870001 119 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 154 5679*****************************885 PP | |||||||
2 | ELK | 37.2 | 6.4e-13 | 74 | 95 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sLkqE+s GSBRNA2T00055870001 74 ELKNHLLKKYSGYLSSLKQELS 95 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 3.2E-10 | 8 | 52 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.0E-15 | 16 | 51 | IPR005541 | KNOX2 |
Pfam | PF03789 | 3.1E-10 | 74 | 95 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.243 | 74 | 94 | IPR005539 | ELK domain |
SMART | SM01188 | 1.0E-6 | 74 | 95 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.021 | 94 | 157 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.55E-20 | 95 | 169 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.0E-13 | 96 | 161 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-28 | 99 | 160 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.29E-11 | 106 | 158 | No hit | No description |
Pfam | PF05920 | 4.0E-17 | 114 | 153 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 132 | 155 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MLSLYFCLYR KFYQQEAYCD MLVKYREELT RPIEEAMEYI RRIESQISML CQDNNNSGGE 60 AELPEIDPRA EDRELKNHLL KKYSGYLSSL KQELSKKKKK GKLPKEARQK LLTWWELHYK 120 WPYPSESEKV ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFMVMDGLQ HPHHAALYMD 180 GHYMGDGPYR LGP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vegetative meristem. Present in the base of flower primordia (PubMed:26390296). {ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:26390296, ECO:0000269|PubMed:7866029}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development (PubMed:11934861). Positive regulator of LATERAL ORGAN BOUNDARIES (LOB) (PubMed:11934861). Probably binds to the DNA sequence 5'-TGAC-3' (PubMed:11934861). Able to traffic from the L1 to the L2/L3 layers of the meristem, presumably through plasmodesmata (PubMed:12900451). {ECO:0000269|PubMed:11934861, ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:7866029}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00055870001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ASYMMETRIC LEAVES1 (AS1) and ASYMMETRIC LEAVES2 (AS2). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF482994 | 1e-170 | AF482994.1 Arabidopsis thaliana Landsberg erecta homeodomain protein KNAT1/BP mRNA, complete cds. | |||
GenBank | AF482995 | 1e-170 | AF482995.1 Arabidopsis thaliana RLD homeodomain protein KNAT1/BP mRNA, complete cds. | |||
GenBank | ATU14174 | 1e-170 | U14174.1 Arabidopsis thaliana clone KNAT1 knotted-like homeobox protein gene, partial cds. | |||
GenBank | AY080834 | 1e-170 | AY080834.1 Arabidopsis thaliana putative KNAT1 homeobox protein (At4g08150) mRNA, complete cds. | |||
GenBank | AY113982 | 1e-170 | AY113982.1 Arabidopsis thaliana putative KNAT1 homeobox protein (At4g08150) mRNA, complete cds. | |||
GenBank | JQ403648 | 1e-170 | JQ403648.1 Arabidopsis thaliana KNAT1/BP transcription factor splice variant (BPhox) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013680910.1 | 1e-117 | homeobox protein knotted-1-like 1 isoform X2 | ||||
Swissprot | P46639 | 1e-114 | KNAT1_ARATH; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A078H8X7 | 1e-142 | A0A078H8X7_BRANA; BnaC03g28030D protein | ||||
STRING | Bra000638.1-P | 1e-116 | (Brassica rapa) | ||||
STRING | Bo3g043050.1 | 1e-116 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6566 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-101 | KNOTTED-like from Arabidopsis thaliana |