PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00055763001 | ||||||||
Common Name | GSBRNA2T00055763001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 165aa MW: 19801 Da PI: 7.0044 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.6 | 3.1e-09 | 61 | 116 | 4 | 59 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 kr rr+ +NRe+ArrsR RK+++i e + v++L++ N L +++ +l + ++ GSBRNA2T00055763001 61 EKRLRRMVSNRESARRSRMRKRKQIREKKMHVEQLTTSNYNLYNKVISLLERTPQI 116 59*************************************99998877776666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0021 | 58 | 122 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 3.0E-8 | 59 | 109 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.4E-7 | 59 | 111 | No hit | No description |
PROSITE profile | PS50217 | 10.059 | 60 | 123 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-8 | 62 | 111 | No hit | No description |
CDD | cd14702 | 3.36E-12 | 63 | 113 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 65 | 80 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MEAEDQHPSH YFNLYEGDSS QNDHFNLQNP QNDHDHDHDQ DLHVHDHCTH PQASSVVIDQ 60 EKRLRRMVSN RESARRSRMR KRKQIREKKM HVEQLTTSNY NLYNKVISLL ERTPQILHEN 120 SQLEEKLSYF HQYFMEDRMV LPGNNIDCDI TRQYLRFCIN QLGK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 83 | MRKRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00055763001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC241004 | 0.0 | AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010522314.1 | 3e-33 | PREDICTED: basic leucine zipper 43 | ||||
TrEMBL | A0A078JN80 | 1e-118 | A0A078JN80_BRANA; BnaUnng01680D protein | ||||
STRING | Bra005971.1-P | 8e-98 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17031 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08141.1 | 4e-16 | basic leucine-zipper 75 |
Publications ? help Back to Top | |||
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