PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00055558001 | ||||||||
Common Name | GSBRNA2T00055558001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 935aa MW: 102948 Da PI: 5.5908 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.9 | 4.8e-29 | 586 | 636 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ GSBRNA2T00055558001 586 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 636 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55781 | 2.94E-5 | 209 | 280 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 17.393 | 575 | 656 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.1E-26 | 588 | 636 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.05E-23 | 828 | 922 | No hit | No description |
Pfam | PF00564 | 6.3E-20 | 838 | 919 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.3E-27 | 838 | 920 | No hit | No description |
PROSITE profile | PS51745 | 27.384 | 838 | 920 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.8E-28 | 838 | 920 | IPR000270 | PB1 domain |
CDD | cd06407 | 5.09E-34 | 839 | 919 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0010167 | Biological Process | response to nitrate | ||||
GO:0042128 | Biological Process | nitrate assimilation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 935 aa Download sequence Send to blast |
MCEPDDNTAR NGATPPPSRS REVLMDVDDL DLDGSWPLDQ IPYLSSSNRM ISPLFVSSSS 60 EQPCSPLWAF SDVGGAVNHG GDDEKISSAS VVPSFRLADY PLFLPYSSSP SVAENTLEKH 120 NGFQFPSPLM SLVPPENTDN YCVIKERMTQ ALRYFKESTE QHVLAQVWAP VRKNGRDLLT 180 TLGQPFVLNP NGNGLNQYRM ISLTYMFSVD SESDIELGLP GRVFRQKLPE WTPNVQYYSS 240 KEFSRLDHAL HYNVRGTLAL PVFNPSGESC IGVVELIMTS EKIHYAPEVD RVCKALEAVN 300 LKSSEILDHQ TTQICNESRQ NALAEILEVL TVVCETHNLP LAQTWVPCQH GSVLANGGGL 360 KKNCTSFDGS CMGQVCMSTT DMACYVVDAH VWGFRDACLE HHLQKGQGVA GRAFLNGGSC 420 FCRDITKFCK TQYPLVHYAL MFKLTTCFAI SLQSSYTGDD SYILEFFLPS SMTDNQEQDS 480 LLGSLLVTMK EHFQSLRVAS GVDFGEDDDK LSFEIIQALP DEKIHSEIES IRVPFSGFKS 540 NATETLLMPQ PAVQSSEPVN GKTNGATVNG VVKEKKKTEK KRGKTEKTIS LDVLQQYFTG 600 SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKIKKVNRSI TKLKRVIESV QCTDGGLDLT 660 SMAVSSIPWT HGQTAAHPLN SPNGSKPPEL PTTNNSPNHW SSDHHSPPEP NGSPELPSNG 720 HKRSRTGDES AGTPTSHGSC DGNQLDETKV PNQDPLFTVG GPPGLFFPPY SRDHDVSAAS 780 FAMPNRLLGT IDHFRGMPIE DAGSSKDLRN LCSTAAFDDK FPDSNWMNND NNSNNNITVT 840 IKASYKEDII RFRISSGSGI MELKDEVAKR LRLDAGTFDI KYLDDDNEWV LIACDADLQE 900 CLEIPRSSRT NVVRLLVHDV TANLGSSCES TGEL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269|PubMed:18826430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00449 | DAP | Transfer from AT4G24020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00055558001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228452 | 0.0 | AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13. | |||
GenBank | BT005776 | 0.0 | BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009137614.1 | 0.0 | PREDICTED: protein NLP7 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A078JMT5 | 0.0 | A0A078JMT5_BRANA; BnaA01g35090D protein | ||||
STRING | Bra013754.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2507 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |