PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00055558001
Common NameGSBRNA2T00055558001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 935aa    MW: 102948 Da    PI: 5.5908
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00055558001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.94.8e-29586636252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++
  GSBRNA2T00055558001 586 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 636
                          799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF557812.94E-5209280IPR029016GAF domain-like
PROSITE profilePS5151917.393575656IPR003035RWP-RK domain
PfamPF020427.1E-26588636IPR003035RWP-RK domain
SuperFamilySSF542771.05E-23828922No hitNo description
PfamPF005646.3E-20838919IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.3E-27838920No hitNo description
PROSITE profilePS5174527.384838920IPR000270PB1 domain
SMARTSM006662.8E-28838920IPR000270PB1 domain
CDDcd064075.09E-34839919No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0010118Biological Processstomatal movement
GO:0010167Biological Processresponse to nitrate
GO:0042128Biological Processnitrate assimilation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MCEPDDNTAR NGATPPPSRS REVLMDVDDL DLDGSWPLDQ IPYLSSSNRM ISPLFVSSSS  60
EQPCSPLWAF SDVGGAVNHG GDDEKISSAS VVPSFRLADY PLFLPYSSSP SVAENTLEKH  120
NGFQFPSPLM SLVPPENTDN YCVIKERMTQ ALRYFKESTE QHVLAQVWAP VRKNGRDLLT  180
TLGQPFVLNP NGNGLNQYRM ISLTYMFSVD SESDIELGLP GRVFRQKLPE WTPNVQYYSS  240
KEFSRLDHAL HYNVRGTLAL PVFNPSGESC IGVVELIMTS EKIHYAPEVD RVCKALEAVN  300
LKSSEILDHQ TTQICNESRQ NALAEILEVL TVVCETHNLP LAQTWVPCQH GSVLANGGGL  360
KKNCTSFDGS CMGQVCMSTT DMACYVVDAH VWGFRDACLE HHLQKGQGVA GRAFLNGGSC  420
FCRDITKFCK TQYPLVHYAL MFKLTTCFAI SLQSSYTGDD SYILEFFLPS SMTDNQEQDS  480
LLGSLLVTMK EHFQSLRVAS GVDFGEDDDK LSFEIIQALP DEKIHSEIES IRVPFSGFKS  540
NATETLLMPQ PAVQSSEPVN GKTNGATVNG VVKEKKKTEK KRGKTEKTIS LDVLQQYFTG  600
SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKIKKVNRSI TKLKRVIESV QCTDGGLDLT  660
SMAVSSIPWT HGQTAAHPLN SPNGSKPPEL PTTNNSPNHW SSDHHSPPEP NGSPELPSNG  720
HKRSRTGDES AGTPTSHGSC DGNQLDETKV PNQDPLFTVG GPPGLFFPPY SRDHDVSAAS  780
FAMPNRLLGT IDHFRGMPIE DAGSSKDLRN LCSTAAFDDK FPDSNWMNND NNSNNNITVT  840
IKASYKEDII RFRISSGSGI MELKDEVAKR LRLDAGTFDI KYLDDDNEWV LIACDADLQE  900
CLEIPRSSRT NVVRLLVHDV TANLGSSCES TGEL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269|PubMed:18826430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00449DAPTransfer from AT4G24020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00055558001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2284520.0AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBankBT0057760.0BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137614.10.0PREDICTED: protein NLP7
SwissprotQ84TH90.0NLP7_ARATH; Protein NLP7
TrEMBLA0A078JMT50.0A0A078JMT5_BRANA; BnaA01g35090D protein
STRINGBra013754.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25072666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Xu N, et al.
    The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.
    Plant Cell, 2016. 28(2): p. 485-504
    [PMID:26744214]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Yu LH, et al.
    Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation.
    Sci Rep, 2016. 6: p. 27795
    [PMID:27293103]
  5. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  6. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]
  7. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  8. Liu KH, et al.
    Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks.
    Nature, 2017. 545(7654): p. 311-316
    [PMID:28489820]
  9. Li Z, et al.
    The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1.
    New Phytol., 2017. 216(4): p. 1205-1222
    [PMID:28850721]
  10. Cao H, et al.
    Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation.
    Front Plant Sci, 2017. 8: p. 1703
    [PMID:29051766]
  11. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]
  12. Karve RA,Iyer-Pascuzzi AS
    Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release.
    Plant Signal Behav, 2018. 13(1): p. e1414122
    [PMID:29215953]
  13. Zhao L, et al.
    The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium.
    Sci Rep, 2018. 8(1): p. 1487
    [PMID:29367694]