PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00055393001
Common NameGSBRNA2T00055393001, LOC106364852
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 319aa    MW: 36693.7 Da    PI: 5.2154
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00055393001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.1e-182875148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd +l++++  +G g+W++ +r+ g++Rt+k+c++rw++yl
  GSBRNA2T00055393001 28 RGPWTVEEDFKLINYISTHGEGRWNSLSRCAGLKRTGKSCRLRWLNYL 75
                         89********************************************97 PP
2Myb_DNA-binding50.54.7e-1681124146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GSBRNA2T00055393001  81 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6722375IPR017930Myb domain
SuperFamilySSF466894.49E-3125122IPR009057Homeodomain-like
SMARTSM007172.0E-152777IPR001005SANT/Myb domain
PfamPF002493.6E-162875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-222982IPR009057Homeodomain-like
CDDcd001672.37E-113075No hitNo description
PROSITE profilePS5129422.91776130IPR017930Myb domain
SMARTSM007172.9E-1480128IPR001005SANT/Myb domain
PfamPF002497.8E-1581124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2283129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDDKRSLMMN KNIGDFENNV DEEMDLRRGP WTVEEDFKLI NYISTHGEGR WNSLSRCAGL  60
KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN  120
YWRTRVQKHA KQLRCDVNSQ QFKDTMRYLW MPRLVERIQA SASTSTGSAT TSSCVTTPSD  180
QFLMTSYDAG LNNNNNTNMD HLNFMSNPNG YVTQETSSVS VSPTSGLTEY HIGSEVEKVE  240
NNQDQSLVGP QIMSPPQNYL DVNGGLLSED LTQSYHNWFE NDNGMISPYS DSFWNIGSDE  300
DFWLLLQQQQ QLVNNGSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-252512224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00055393001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756560.0KM975656.1 Brassica napus MYB transcription factor 78-1.1 (MYB78-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129805.10.0PREDICTED: transcription factor MYB108-like
RefseqXP_013659795.10.0transcription factor MYB78
SwissprotQ9FGY31e-145MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A078H7Q10.0A0A078H7Q1_BRANA; BnaA02g30960D protein
TrEMBLA0A398AFI90.0A0A398AFI9_BRACM; Uncharacterized protein
TrEMBLM4DVT00.0M4DVT0_BRARP; Uncharacterized protein
STRINGBra020624.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-131myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]