PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00055389001

Common Name

GSBRNA2T00055389001, LOC106367764

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 316aa MW: 34575.6 Da PI: 8.8085

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00055389001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.5	1.8e-15	156	209	4	57
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L eN+ L k l +++ GSBRNA2T00055389001 156 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSNLMKGLTDVTQTFN 209 79****************************************998887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-17	153	217	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.852	155	218	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.3E-12	156	207	No hit	No description
Pfam	PF00170	2.0E-13	156	204	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-12	157	207	No hit	No description
PROSITE pattern	PS00036	0	160	175	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	7.9E-14	224	272	IPR020983	Basic leucine-zipper, C-terminal
Pfam	PF12498	4.3E-6	281	310	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MEKTLSVEEI SCNHLWSELA EETNGTTAKG MMNRSDSEWA FQRFIQESSS AGEAVYGVSV 60 SGPPSPSVPV DSEEYREFLK SKLNLACAAV AMKRGAFSKP QDTSVRSENG GAYTSTASDQ 120 GSLASSKATP VMSSAITSGS ELSGDEEETN MNPTNVKRVK RMLSNRESAR RSRRRKQAHL 180 SELETQVSQL RVENSNLMKG LTDVTQTFNE AAVENRVLKA NIETLRAKVK MAEETVKRLT 240 GFNPMYHTMP QVSTVSNPSE TSDSVDTSIR VTTSEISSGN KNKALTGCKM NRTESMRRVA 300 SLEHLQKRIR SVGDQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	176	RRSRRRKQ
2	171	176	SRRRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.21212	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Present in silique valves, vasculature and funiculi. {ECO:0000269\|PubMed:18841482}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, young leaves, pollen, and flowers. {ECO:0000269\|PubMed:12657652, ECO:0000269\|PubMed:18841482}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269\|PubMed:26263501, ECO:0000269\|PubMed:29348240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00055389001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353265	0.0	AK353265.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-D15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013663058.1	0.0	basic leucine zipper 63
Swissprot	B9DGI8	1e-157	BZP63_ARATH; Basic leucine zipper 63
TrEMBL	A0A078H8L9	0.0	A0A078H8L9_BRANA; BnaA02g31000D protein
STRING	Bra020620.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6846	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-153	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	106367764

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Mair A, et al. SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife, 2016. [PMID:26263501] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]