PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00055245001 | ||||||||
Common Name | GSBRNA2T00055245001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 116aa MW: 13368.5 Da PI: 11.2698 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.6e-20 | 20 | 71 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++ +g+WvAeIr+p++ r+r +lg+f t eeAa a+++a++kl+g+ GSBRNA2T00055245001 20 CRYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATSEEAAMAYDEAALKLYGH 71 78*****999.**********965...5*************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-15 | 20 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-28 | 20 | 80 | No hit | No description |
SMART | SM00380 | 4.5E-37 | 21 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-22 | 21 | 79 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.209 | 21 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-31 | 21 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 116 aa Download sequence Send to blast |
MKQWKKGPAR GKGGPQNALC RYRGVRQRTW GKWVAEIREP KKRTRLWLGS FATSEEAAMA 60 YDEAALKLYG HDAYLNLPHL QQRKQGPPVN NTQRFKWSSH YPAKKKRTSI SILFL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-18 | 22 | 78 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-18 | 22 | 78 | 6 | 63 | ATERF1 |
3gcc_A | 3e-18 | 22 | 78 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00055245001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189469 | 1e-103 | AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589356.1 | 3e-67 | PREDICTED: dehydration-responsive element-binding protein 2F-like | ||||
Swissprot | Q9SVX5 | 8e-58 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | A0A078H5D2 | 5e-80 | A0A078H5D2_BRANA; BnaCnng07330D protein | ||||
STRING | Bo6g073020.1 | 4e-67 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8168 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57600.1 | 3e-60 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|