PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00055208001
Common NameGSBRNA2T00055208001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 443aa    MW: 47998.2 Da    PI: 8.7766
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00055208001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.22e-34181237259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgsefprsYY+Ct +gCpvkkkvers  d++v+ei+Y+g+Hnhe
  GSBRNA2T00055208001 181 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSL-DGQVTEIIYKGQHNHE 237
                          8****************************************.***************8 PP
2WRKY105.72.4e-33341399159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a dpk+v++tYeg+Hnh+
  GSBRNA2T00055208001 341 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCGVRKHVERAAADPKAVVTTYEGKHNHD 399
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-30168239IPR003657WRKY domain
SuperFamilySSF1182902.09E-26179239IPR003657WRKY domain
SMARTSM007746.6E-39180238IPR003657WRKY domain
PfamPF031061.7E-26181237IPR003657WRKY domain
PROSITE profilePS5081124.857181239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36326401IPR003657WRKY domain
SuperFamilySSF1182901.11E-29333401IPR003657WRKY domain
PROSITE profilePS5081138.113336401IPR003657WRKY domain
SMARTSM007741.4E-39341400IPR003657WRKY domain
PfamPF031065.0E-26342399IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MSEKEELPST SKSTGAPSRP TLSLPPRPFS DMFFSAGVGF SPGPMTLVSN MFPESDEFRS  60
FSQLLAGAMA SPAAAAAASA GAARLSPAMR LDSPSFLGLF SPLQGSYGMT HQQALAQVTA  120
QAVQANANMQ PQTEYPHSSQ AQPFSSSAPD SSLLAPIETS ITTIIEQRSQ QQPLNVDKPA  180
DDGYNWRKYG QKQVKGSEFP RSYYKCTNPG CPVKKKVERS LDGQVTEIIY KGQHNHEPPQ  240
NTKRGNNNKD SNLNGSLVNN NKSKREQHEA ASQATTTEQM SEASDSEEVG NGESGVRERA  300
EDEPDAKKVR VSEPAAAVST SHRTVTEPKI IVQTTSEVDL LDDGYRWRKY GQKVVKGNPY  360
PRSYYKCTTQ GCGVRKHVER AAADPKAVVT TYEGKHNHDL PASKSSSHAT AAAAQLRPEN  420
RHGGSANQQP VARLRLKEEH II*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-45181402878Probable WRKY transcription factor 4
2lex_A7e-45181402878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00055208001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931610.0KM593161.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY94) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117949.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A078HAB10.0A0A078HAB1_BRANA; BnaA09g45940D protein
STRINGBra026869.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.20.0WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]