PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00055165001
Common NameGSBRNA2T00055165001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 279aa    MW: 31065.3 Da    PI: 10.1951
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00055165001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind339.21e-10312781301
            GAGA_bind   1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerd.....maflqrdkalaernkalverdn 79 
                          mdddg+  rn+gyyepa  +s+k nlglqlm +i +r++k+    r+ nl ++++ ++++++      m++    +++++       +++
  GSBRNA2T00055165001   1 MDDDGF--RNWGYYEPAaaTSFKGNLGLQLMPTI-DRNTKPflpgRDPNL-MIGQTGSYHHQHhpephMSY----NWINQ-------HKD 75 
                          99**99..9******99899**************.9**************.99999999888778888888....*****.......789 PP

            GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekk.kkkkrqrakkpkekkakkkk 168
                          k++++l+v+++     p++ +vl++t+s  s+++    +l+      +++++++++p++++++ +++kk k+++++ ++ +k+kk +k+k
  GSBRNA2T00055165001  76 KFFNMLPVTTT-----PNYGNVLPQTSSSPSMHM----NLH------HHHHQTDEHPVKCEPDIIETKKrKPNSKAGGAATKAKKPRKPK 150
                          *******9986.....9**************999....332......2345566778888777665554045555667778888888888 PP

            GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258
                          +++     ++++++  +r+k  kks dlv+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+gr
  GSBRNA2T00055165001 151 EEN----GDSNNANI-SRVKPAKKSFDLVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGR 235
                          843....22333333.689*********************************************************************** PP

            GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          KmSqgafkk+LekLa++G++++ p+DLk+hWA+HGtnkfvtir
  GSBRNA2T00055165001 236 KMSQGAFKKVLEKLASDGFNFGSPIDLKSHWARHGTNKFVTIR 278
                          ******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.3E-941278IPR010409GAGA-binding transcriptional activator
SMARTSM012263.0E-1601278IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATSF KGNLGLQLMP TIDRNTKPFL PGRDPNLMIG QTGSYHHQHH  60
PEPHMSYNWI NQHKDKFFNM LPVTTTPNYG NVLPQTSSSP SMHMNLHHHH HQTDEHPVKC  120
EPDIIETKKR KPNSKAGGAA TKAKKPRKPK EENGDSNNAN ISRVKPAKKS FDLVINGVNM  180
DISGLPVPVC TCTGAPQQCY RWGCGGWQSA CCTTNISMHP LPMSTKRRGA RISGRKMSQG  240
AFKKVLEKLA SDGFNFGSPI DLKSHWARHG TNKFVTIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.15220.0flower| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00055165001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117886.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9LDE21e-161BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A3P5Y9300.0A0A3P5Y930_BRACM; Uncharacterized protein
STRINGBra026813.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-149basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]