PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00054985001

Common Name

GSBRNA2T00054985001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 762aa MW: 85019.9 Da PI: 6.0697

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00054985001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.5	6.2e-29	502	553	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i++++l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ GSBRNA2T00054985001 502 AEKTITFDVLRQHFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 553 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.075	492	573	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-25	505	553	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.77E-22	660	755	No hit	No description
PROSITE profile	PS51745	26.62	670	753	IPR000270	PB1 domain
SMART	SM00666	1.3E-25	670	753	IPR000270	PB1 domain
Pfam	PF00564	1.4E-18	671	752	IPR000270	PB1 domain
CDD	cd06407	2.78E-39	671	751	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.8E-20	671	750	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence Send to blast
MEDSLLQTEN TVMDTEFMDG LLLDGCWLET TDGSVSPFDP SSFKWPPTQD TSSICTSEVV 60 SQTYGQDCAS LDEFPWNKRW WIGPGGGGSS ITERLLWVPV NRGGKRVLTT REQPYSHDPT 120 CQRLANYREV SVNYHFSAEK DDSKALAGLP GRVFLGRLPE WTPDVRFFRS EEYPRVHHAQ 180 DCDVRGTLAI PVFEQGSKVC LGVIEVVMTT EMVKLAPELE SICRALQAVD LRSTEVQIPP 240 SLKGCDLSYK AALPEIRNLL RCACETHKLP LAQTWVSCLH QSKSGCRHND ENYIHCVSTI 300 DDACYLGDPT VREFHEACSE HHLLKGQGVA GQAFLTNGPC FSPDVSNYKK SEYPLSHHAN 360 IFGLHGSVAI RLRCIHTGSV DFVLEFFLPK DCGDVEEQRK ILNALSTIMA HVPRSLRIVT 420 DKELEDESEV IVTPKIEITS EHTKDWLHQS NNPENLGLIF DVGDKASDEF GLKRGFGYTR 480 DSNINESSTF SSKMAETKRT KAEKTITFDV LRQHFAGSLK DAAKNIGVCP TTLKRICRQH 540 GIQRWPSRKI KKVGHSLQKI QRVIDSVEGV SGLLPIGSFF ANFPNLASSQ EPSLQGKTSL 600 SPQPLQLSKS PVSPYSHSSS SSQCCSSETQ LNSDTTTTTT DVGGGVLTLS SLENIPQSTN 660 LSLSSLDNDF LRIKVSYGEE KIRFRMGNSR RLSDLLWEIG KRFSIEDMSR CDLKYLDEDN 720 EWVLLTCDED VEECVSVCST TRSHTIKLLL HVSSHCYNSW Q*

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence Send to blast

MEDSLLQTEN TVMDTEFMDG LLLDGCWLET TDGSVSPFDP SSFKWPPTQD TSSICTSEVV  60
SQTYGQDCAS LDEFPWNKRW WIGPGGGGSS ITERLLWVPV NRGGKRVLTT REQPYSHDPT  120
CQRLANYREV SVNYHFSAEK DDSKALAGLP GRVFLGRLPE WTPDVRFFRS EEYPRVHHAQ  180
DCDVRGTLAI PVFEQGSKVC LGVIEVVMTT EMVKLAPELE SICRALQAVD LRSTEVQIPP  240
SLKGCDLSYK AALPEIRNLL RCACETHKLP LAQTWVSCLH QSKSGCRHND ENYIHCVSTI  300
DDACYLGDPT VREFHEACSE HHLLKGQGVA GQAFLTNGPC FSPDVSNYKK SEYPLSHHAN  360
IFGLHGSVAI RLRCIHTGSV DFVLEFFLPK DCGDVEEQRK ILNALSTIMA HVPRSLRIVT  420
DKELEDESEV IVTPKIEITS EHTKDWLHQS NNPENLGLIF DVGDKASDEF GLKRGFGYTR  480
DSNINESSTF SSKMAETKRT KAEKTITFDV LRQHFAGSLK DAAKNIGVCP TTLKRICRQH  540
GIQRWPSRKI KKVGHSLQKI QRVIDSVEGV SGLLPIGSFF ANFPNLASSQ EPSLQGKTSL  600
SPQPLQLSKS PVSPYSHSSS SSQCCSSETQ LNSDTTTTTT DVGGGVLTLS SLENIPQSTN  660
LSLSSLDNDF LRIKVSYGEE KIRFRMGNSR RLSDLLWEIG KRFSIEDMSR CDLKYLDEDN  720
EWVLLTCDED VEECVSVCST TRSHTIKLLL HVSSHCYNSW Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00054985001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189346	0.0	AC189346.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042N05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013727433.1	0.0	protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A078H826	0.0	A0A078H826_BRANA; BnaC08g19370D protein
STRING	Bo8g070310.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]