PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00054659001 | ||||||||
Common Name | GSBRNA2T00054659001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 732aa MW: 81015.7 Da PI: 5.5256 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3.1e-19 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p+ ++r+eL+++l+L+ q+k+WFqN+R+++k GSBRNA2T00054659001 63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELNLEPLQIKFWFQNKRTQMK 118 688999***********************************************998 PP | |||||||
2 | START | 203.5 | 8.5e-64 | 257 | 476 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela +a++elv++a+ ++ +Wv+ e++n++e+ + f++ + +++ea+r+s+vv+m++ +lve+l+d++ qW + + GSBRNA2T00054659001 257 ELAVAAMEELVTMAQTSDLLWVLNDnlgEILNEEEYFRMFPRCIGpkpigFRSEASRESTVVIMNHINLVEILMDVN-QWFSVFCgivsR 345 57899*******************99**************99998********************************.****9999999* PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 a tlev+s+g galq+m+ae+q++splvp R+ +f+Ry++q+g+ +w++vdvS+d+ ++ p + R++++pSg+li++++ng+ GSBRNA2T00054659001 346 ALTLEVLSTGiagnynGALQVMTAEFQVPSPLVPtRENYFLRYCKQHGDNTWAVVDVSLDNLRPSP----ITRSRRRPSGCLIQELQNGY 431 ****************************************************************99....7******************* PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 skvtwveh+++++r++h ++++lv++gla+gak+wvatl+rqce+ GSBRNA2T00054659001 432 SKVTWVEHMEVDDRSVHTMYKPLVNTGLAFGAKRWVATLDRQCER 476 *******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 46 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-18 | 53 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.86 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.0E-18 | 61 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.7E-17 | 63 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.60E-19 | 63 | 121 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.691 | 248 | 479 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.24E-35 | 250 | 478 | No hit | No description |
CDD | cd08875 | 1.18E-122 | 252 | 475 | No hit | No description |
SMART | SM00234 | 2.3E-71 | 257 | 476 | IPR002913 | START domain |
Pfam | PF01852 | 2.2E-53 | 258 | 476 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.0E-6 | 357 | 475 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.58E-22 | 496 | 723 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MYQPNMFEAH QHMFDMTPKE SDTDLGLTGS REDDFETKSG AEVTMENLLE EELQDPNQRP 60 NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELN LEPLQIKFWF QNKRTQMKAH 120 HERHDNSILK ADNDKLRAEN NRYKDALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE 180 EIDRISSMAA KYVGKPLSSH STQLTSSHYI PSRSLDLEAV NFGTNHQTSF VGEMHGTSDI 240 MRSVSIPCEA DKPIIVELAV AAMEELVTMA QTSDLLWVLN DNLGEILNEE EYFRMFPRCI 300 GPKPIGFRSE ASRESTVVIM NHINLVEILM DVNQWFSVFC GIVSRALTLE VLSTGIAGNY 360 NGALQVMTAE FQVPSPLVPT RENYFLRYCK QHGDNTWAVV DVSLDNLRPS PITRSRRRPS 420 GCLIQELQNG YSKVTWVEHM EVDDRSVHTM YKPLVNTGLA FGAKRWVATL DRQCERLASS 480 MASNIPTGDL SVITSPEGRK SMLKLAERMA RSFCSGVGAS TAHAWTTLAT TGSDDVRVMT 540 RKSMDDPGRP PGIVLSAATS FWIPVAPKRV FDFLKDENSR SEWDILSNGG LVQEMAHIAN 600 GRDPGNCVSL LRVNGTNSGQ GNMLILQESC TDVSGSYVIY APVDVAAMDV VLSGGDPDYV 660 ALLPSGFAIL PDGGEGGDAM VNSGSLLTVA FQIIVDSVPT AKLSLGSVTT VNSLIKCTAE 720 RIKGALACDG A* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the apical cell after the first asymmetric division of the zygote. Expressed in all proembryo cells until the eight-cell stage, and then restricted to the protoderm in the 16-cell proembryo. Not detected in the torpedo stage, but reappeared later in the L1 layer of the shoot apical meristem in the mature embryo. After germination, the L1 layer-specific expression pattern is maintained in the vegetative shoot apical meristem, inflorescence, floral meristems, and the young floral organ primordia. Finally, expressed in the protoderm of the ovule primordia and integuments and gradually restricted to the endothelium surrounding the embryo sac. {ECO:0000269|PubMed:10571886, ECO:0000269|PubMed:8989876}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00054659001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623905.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like isoform X4 | ||||
Refseq | XP_022550365.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1-like isoform X2 | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A078JMM7 | 0.0 | A0A078JMM7_BRANA; BnaCnng51630D protein | ||||
STRING | Bo1g025510.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |