PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00054550001
Common NameGSBRNA2T00054550001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 295aa    MW: 33085.3 Da    PI: 6.5103
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00054550001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072442762254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp+++++++L +++gL+ +q+ +WF N+R +
  GSBRNA2T00054550001 244 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 276
                          58*****************************87 PP
2ELK22.72.3e-08197218122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++++++++ ++++E++
  GSBRNA2T00054550001 197 ELKLELKQGFKSRIEDVREEIM 218
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.4E-192973IPR005540KNOX1
PfamPF037902.0E-163172IPR005540KNOX1
SMARTSM012565.1E-2583138IPR005541KNOX2
PfamPF037912.8E-1987137IPR005541KNOX2
PROSITE profilePS512139.202197217IPR005539ELK domain
PROSITE profilePS5007111.823217280IPR001356Homeobox domain
SMARTSM003896.3E-11219284IPR001356Homeobox domain
SuperFamilySSF466892.48E-16219283IPR009057Homeodomain-like
CDDcd000862.01E-11220281No hitNo description
Gene3DG3DSA:1.10.10.605.0E-25224282IPR009057Homeodomain-like
PfamPF059203.3E-18237276IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MQEAALGMIG ATVGGGGDGD AAVVAEQNRQ MKGEIATHPM YEQLLAAHVA CLRVATPIDQ  60
LPIIEAQLSH SHHLLRSYAS TAVGFSHHDR QELDNFLAQY VMVLCSFKEQ LQQHVRVHAV  120
EAVMACREIE NNLHSLTGAT LGEGSGATMS EDEDDLQMDF SSDNSGVDFS GGHDMTGFGP  180
LLPTESERSL MERVRQELKL ELKQGFKSRI EDVREEIMRK RRAGKLPGDT TTVLKNWWQQ  240
HCKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHN NSHSLTSLKS KRKQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In roots, stems and cotyledons of one-week old seedlings. In mature plants, in young leaves from first level below flowers as well as in flower buds and open flowers.
Functional Description ? help Back to Top
Source Description
UniProtPossible developmental regulator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00054550001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ290730.0Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302915.10.0homeobox protein HD1
SwissprotP466060.0HD1_BRANA; Homeobox protein HD1
TrEMBLA0A078JIK70.0A0A078JIK7_BRANA; BnaCnng51440D protein
STRINGBra036636.1-P0.0(Brassica rapa)
STRINGBo9g028790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.10.0KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]