PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00054404001

Common Name

GSBRNA2T00054404001, LOC106361184

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 574aa MW: 61276.2 Da PI: 7.6263

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00054404001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.9	2.3e-14	119	158	1	41
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++kk+CnCk s+Clk+YCeCfaag++C+ C+C +C+N+ + GSBRNA2T00054404001 119 QKKKHCNCKLSRCLKLYCECFAAGTYCDG-CNCLNCFNNVD 158 589************************.******986 PP
2	TCR	51.3	2.3e-16	201	240	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a++ Cse+C+C +CkN e GSBRNA2T00054404001 201 KHNKGCHCKKSGCLKKYCECFQANVLCSENCRCLGCKNFE 240 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.7E-16	119	159	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.518	120	241	IPR005172	CRC domain
Pfam	PF03638	1.1E-10	121	156	IPR005172	CRC domain
SMART	SM01114	3.8E-19	201	242	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.4E-12	204	239	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MGEGGGGGGG GGGDFPPKKD GESDDSCFPA KKEATQLDFT GGSDEHYSES HTVVTPSVTP 60 PVTTTPSRLH PVARPALPVV TSQSQSQILN APISLPKPPE SPESRARPPI VEGRDGTPQK 120 KKHCNCKLSR CLKLYCECFA AGTYCDGCNC LNCFNNVDNE PARRDAVEAT LDRNPNAFRP 180 KIASSPHGVR DKKEEIVLLG KHNKGCHCKK SGCLKKYCEC FQANVLCSEN CRCLGCKNFE 240 GSEERQALFH GEHANNMAYL QQAANAAITG AVGSSGFAPF PAPKRRKGQD ISFNQATNDS 300 SMHRLGQFQQ ASNGRTSGPT STTSPANVSR AGGNSSAPSK FVYRSLLAEI IQPQDVKALC 360 SVLVAVAGET TKTLTDRRNE TEKRVEDQTE TSLASYNSQG NKTDGSQADG SKGDPLSPAT 420 LALMCDEQDS LFMVAAAEPN GSVDPGGCGT NSQGQSEIYA EKERVVLTKF RDCLTRLISY 480 ADFKESKCSY LARSHIQSPS TVPTVTVKTE NGIQQRPPVV NGASLTTTQP ALNKPQLVQP 540 TTTTDTSSSH HPHKPPALEE NKDTSESNKV YST*

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MGEGGGGGGG GGGDFPPKKD GESDDSCFPA KKEATQLDFT GGSDEHYSES HTVVTPSVTP  60
PVTTTPSRLH PVARPALPVV TSQSQSQILN APISLPKPPE SPESRARPPI VEGRDGTPQK  120
KKHCNCKLSR CLKLYCECFA AGTYCDGCNC LNCFNNVDNE PARRDAVEAT LDRNPNAFRP  180
KIASSPHGVR DKKEEIVLLG KHNKGCHCKK SGCLKKYCEC FQANVLCSEN CRCLGCKNFE  240
GSEERQALFH GEHANNMAYL QQAANAAITG AVGSSGFAPF PAPKRRKGQD ISFNQATNDS  300
SMHRLGQFQQ ASNGRTSGPT STTSPANVSR AGGNSSAPSK FVYRSLLAEI IQPQDVKALC  360
SVLVAVAGET TKTLTDRRNE TEKRVEDQTE TSLASYNSQG NKTDGSQADG SKGDPLSPAT  420
LALMCDEQDS LFMVAAAEPN GSVDPGGCGT NSQGQSEIYA EKERVVLTKF RDCLTRLISY  480
ADFKESKCSY LARSHIQSPS TVPTVTVKTE NGIQQRPPVV NGASLTTTQP ALNKPQLVQP  540
TTTTDTSSSH HPHKPPALEE NKDTSESNKV YST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-32	121	250	11	132	Protein lin-54 homolog
5fd3_B	3e-32	121	250	11	132	Protein lin-54 homolog
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00054404001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013656350.1	0.0	protein tesmin/TSO1-like CXC 5
Swissprot	Q9SZD1	0.0	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	A0A078JL05	0.0	A0A078JL05_BRANA; BnaA08g30730D protein
STRING	Bra010348.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1783	28	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Entrez Gene	106361184

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]