PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053319001
Common NameGSBRNA2T00053319001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 539aa    MW: 60927.6 Da    PI: 8.6711
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053319001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.45.8e-24143187145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrC+RtDGKkWRCsr+v++ +k+C+rH+hrgr+rsrk++e+
  GSBRNA2T00053319001 143 DPEPGRCKRTDGKKWRCSRNVVGSYKYCDRHIHRGRNRSRKPVET 187
                          79****************************************996 PP
2QLQ514.4e-1875110237
                  QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                           F+ aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k
  GSBRNA2T00053319001  75 LFSLAQWQELELQALIYRYMLAGASVPQELLLPIKK 110
                          59********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-1074110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.51575110IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.8E-1376108IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.496143187IPR014977WRC domain
PfamPF088792.3E-20144186IPR014977WRC domain
SMARTSM007324.5E-28390494IPR006641YqgF/RNase H-like domain
HamapMF_0065118.075390529IPR005227Putative pre-16S rRNA nuclease
Gene3DG3DSA:3.30.420.1403.9E-34390534IPR006641YqgF/RNase H-like domain
SuperFamilySSF530984.55E-28390528IPR012337Ribonuclease H-like domain
PfamPF036527.0E-29391526IPR005227Putative pre-16S rRNA nuclease
TIGRFAMsTIGR002508.0E-17393526IPR005227Putative pre-16S rRNA nuclease
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006364Biological ProcessrRNA processing
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDLQLKQWRS QQQNESKEQS YATKMFNSFS HQIQSQTATS ATALPLFVPE PTTSSSFSCF  60
SPDSSSSRLL KMGNLFSLAQ WQELELQALI YRYMLAGASV PQELLLPIKK SLFHQSHLNF  120
LHYPLQHNFP HHQPWYWGRG AVDPEPGRCK RTDGKKWRCS RNVVGSYKYC DRHIHRGRNR  180
SRKPVETTTN AATNAASSFA LGEKLGQGPD NLFFSSSSSH SSTQHLHLNS HQSCSSDMKQ  240
ERNNNKRPYE AHNGRTNDGH ILRHFFEDWP QSSDSTSRRM SSSTCHLSIS MPTNASSDVS  300
LKLSTCNEEE EEANMRNNNN NEKEHQQSMI CWSSGENHHN MGGPLAEALR SASPTSGLLH  360
QMGISTQEMK YVKPLRLLGD ALKTKVSVPG RFLGLDVGDK YVGLAVSDPS NMIASPLSVL  420
LRKKTNIDLM ATDFQNLVKS FSVSGLVVGY PFGKLNNVED VVTVNLFIEE LRKTEKLKDV  480
KYTYWDERLS SKTVELMLKP LKLHPVQEKT MLDKFAAVVI LQEYLDYANR YVNTEPEE*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053319001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1174330.0AK117433.1 Arabidopsis thaliana At3g52910 mRNA for unknown protein, complete cds, clone: RAFL17-03-N06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681595.10.0growth-regulating factor 4-like
SwissprotQ8L8A71e-153GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A078JI060.0A0A078JI06_BRANA; BnaCnng50230D protein
TrEMBLA0A3P6CK010.0A0A3P6CK01_BRAOL; Uncharacterized protein
STRINGBo4g122960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1163622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.11e-132growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]