PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053141001
Common NameGSBRNA2T00053141001, LOC106443958
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 133aa    MW: 14539.9 Da    PI: 8.8208
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053141001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.9e-211565255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr+++ +g+++AeIrd ++ g   r++lg+f+taeeAa+a+++a+ +++g
  GSBRNA2T00053141001 15 KYRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEEAARAYDQAAYSMRG 65
                         8********.**********65443..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.3E-161565IPR001471AP2/ERF domain
PROSITE profilePS5103224.0261573IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-241575IPR016177DNA-binding domain
CDDcd000183.92E-261574No hitNo description
SMARTSM003801.1E-351579IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-321575IPR001471AP2/ERF domain
PRINTSPR003674.7E-121627IPR001471AP2/ERF domain
PRINTSPR003674.7E-123955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEQGGRGSGG GEQGKYRGVR RRPWGKYAAE IRDSRKHGER VWLGTFDTAE EAARAYDQAA  60
YSMRGQAAIL NFPHEYNMGS GGAATVAGSS SSSASSSRQV FEFEYLDDSV LEELLEDREN  120
PNKNNINKGK KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-5811321131Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310GGRGSGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053141001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113987.16e-93PREDICTED: ethylene-responsive transcription factor ERF096
RefseqXP_013740952.16e-93ethylene-responsive transcription factor ERF096
SwissprotQ9LSX05e-58ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A078H4Y51e-91A0A078H4Y5_BRANA; BnaA09g16520D protein
TrEMBLA0A397XUP11e-91A0A397XUP1_BRACM; Uncharacterized protein
TrEMBLM4EFD11e-91M4EFD1_BRARP; Uncharacterized protein
STRINGBra027493.1-P2e-92(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.13e-29ERF family protein
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]