PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00053092001

Common Name

GSBRNA2T00053092001, LOC106377548

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 531aa MW: 59467.2 Da PI: 8.9757

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00053092001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	355	400	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L+ A +++ sLq GSBRNA2T00053092001 355 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTIAKDHLTSLQ 400 8899******************97.....8***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-15	344	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.269	350	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.92E-12	352	400	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.5E-14	354	418	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-10	355	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-13	356	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MDAIFLTDDP NTRKQLIGSL AHSFGCIYVS LWSYYFPRPS NYLISFDGYY NEASHEPSTS 60 TGSLARRLFH EYRQSVIPLQ NGHIPSMAFM NNLPYLEIQT QDIQRLASND AQRLFYQEAR 120 IQTVIFMGCR SGEIELGLTY DAANMKVEAS LRDWFPEDFS RKTSPVNSDY LRPPPPPSSS 180 SSSLRSLDSP QNASEYSSLL FPLIPKPSTT TDAVNVPLHT LLAPVTTAET TNNMIHQRQQ 240 EPLFRNRERE EEVMTQAILA VLSTSSSPSS PHRKGKATAF KRYYCVASGG GVSGRAPQPP 300 SVRRQSMMKR AISFYNRLNI NWRERFPREN ATGGGSDGIG GSGGGRGPTA TQLHHMISER 360 KRREKLNESF QALRSLLPPG TKKDKASVLT IAKDHLTSLQ GDISKLLERN RELEAKLAGE 420 REMENFLQAD ERFNVRIIHI PESTSRERVL DLRIAHRGDN IGADDLIIRL LEFLKQINNV 480 SLVSIDGKTR AREDGVTSVV LVSLRLKIEG ECDESAFQEA IRRVVADLAH *

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MDAIFLTDDP NTRKQLIGSL AHSFGCIYVS LWSYYFPRPS NYLISFDGYY NEASHEPSTS  60
TGSLARRLFH EYRQSVIPLQ NGHIPSMAFM NNLPYLEIQT QDIQRLASND AQRLFYQEAR  120
IQTVIFMGCR SGEIELGLTY DAANMKVEAS LRDWFPEDFS RKTSPVNSDY LRPPPPPSSS  180
SSSLRSLDSP QNASEYSSLL FPLIPKPSTT TDAVNVPLHT LLAPVTTAET TNNMIHQRQQ  240
EPLFRNRERE EEVMTQAILA VLSTSSSPSS PHRKGKATAF KRYYCVASGG GVSGRAPQPP  300
SVRRQSMMKR AISFYNRLNI NWRERFPREN ATGGGSDGIG GSGGGRGPTA TQLHHMISER  360
KRREKLNESF QALRSLLPPG TKKDKASVLT IAKDHLTSLQ GDISKLLERN RELEAKLAGE  420
REMENFLQAD ERFNVRIIHI PESTSRERVL DLRIAHRGDN IGADDLIIRL LEFLKQINNV  480
SLVSIDGKTR AREDGVTSVV LVSLRLKIEG ECDESAFQEA IRRVVADLAH *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	358	363	ERKRRE
2	359	364	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00053092001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619569.1	0.0	PREDICTED: putative transcription factor bHLH041
Refseq	XP_013673259.1	0.0	putative transcription factor bHLH041
Refseq	XP_022569086.1	0.0	putative transcription factor bHLH041
Swissprot	Q9LTS4	0.0	BH041_ARATH; Putative transcription factor bHLH041
TrEMBL	A0A078H7P5	0.0	A0A078H7P5_BRANA; BnaC02g11970D protein
TrEMBL	A0A3P6DFR4	0.0	A0A3P6DFR4_BRAOL; Uncharacterized protein
STRING	Bo2g032920.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7060	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	0.0	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106377548

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]