PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00052605001 | ||||||||
Common Name | GSBRNA2T00052605001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 29392.1 Da PI: 8.9802 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.4 | 5.8e-12 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+ + G +W+t++ g+ R +k+c++rw +yl GSBRNA2T00052605001 17 KGLWSPEEDQKLKSFILSQGHACWTTVPILAGLQRNGKSCRLRWINYL 64 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+e ++ ++ lG++ W++Ia++++ gRt++++k++w++yl GSBRNA2T00052605001 70 RGTFSAEEEETILILHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 115 899*******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.633 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.28E-26 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-7 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-10 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-19 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.56E-6 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.771 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-15 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.82E-10 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-25 | 72 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGKMTKSGER PKQRQRKGLW SPEEDQKLKS FILSQGHACW TTVPILAGLQ RNGKSCRLRW 60 INYLRPGLKR GTFSAEEEET ILILHSSLGN KWSRIAKYLP GRTDNEIKNY WHSYLKKGCL 120 KSQPPLKTQR NPETLDHVIS FQTLPEKPYS PPSQGSNKNM MNSNNMPKLF FSEWITSSDP 180 RVNYSSEFTD SLHINQTQNR NEDEELMMIK NSYSSLEDDV MFRTEFQQPH HEYANYYTSE 240 DFFINSDVTY M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 17 | 117 | 7 | 106 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00052605001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519636 | 1e-146 | AY519636.1 Arabidopsis thaliana MYB transcription factor (At5g52260) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013681885.1 | 0.0 | transcription factor LAF1-like | ||||
Refseq | XP_013683361.1 | 0.0 | transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 2e-87 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A078H588 | 0.0 | A0A078H588_BRANA; BnaC03g15570D protein | ||||
STRING | Bra029129.1-P | 1e-180 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 1e-129 | myb domain protein 19 |
Publications ? help Back to Top | |||
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