PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00052385001 | ||||||||
Common Name | GSBRNA2T00052385001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 401aa MW: 44815.6 Da PI: 8.4528 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.9e-11 | 223 | 269 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h Er+RR++i ++++ L++llP++ K +K++ L +A+++++ Lq GSBRNA2T00052385001 223 VHRLSERKRRHEISKKMHALQDLLPNC-----YKDDKVSLLDEAIKCMRTLQ 269 59999*********************8.....6*****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 216 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.53E-10 | 217 | 273 | No hit | No description |
SuperFamily | SSF47459 | 4.45E-16 | 217 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.303 | 219 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-8 | 223 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-10 | 225 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MGKNLCASSS QPNMISPSSS FKPTLNDQDY MELVCENGQI LAKSRKTNNN GYFQNQRRQS 60 ILDLYETEYD ESFKKNIKNL EETQVVPVSG EQTNNKKRTK PSKNELERAL LTGNKRFESP 120 TLNDDSLKGL KNVEVIKAPP DEQSEAVGRS TKLYFTPSSM LSRRTSRDLS ISLKKRKCGD 180 NEEEEEETTY LSNSSDDESD DAKTRVPART RKTMAKRKRS TEVHRLSERK RRHEISKKMH 240 ALQDLLPNCY KDDKVSLLDE AIKCMRTLQL QVQMMSMGNG LIQPSVMLPM GNYSPMGLGM 300 HMGAAATTPS LPQFMPMDVQ GTGFLGINNA SSQMLSAFLN HPTGLIPNSP IFSPLESCSQ 360 QLVTPSCFPE TQTTSFSQFP MSGSTTNFED AMQFRGSSGY * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 231 | RKRSTEVHRLSERKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.24161 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Etiolated seedlings. {ECO:0000269|PubMed:12826627}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in responses to transient and long-term shade. Required for the light-mediated inhibition of hypocotyl elongation. Necessary for rapid light-induced expression of the photomorphogenesis- and circadian-related gene APRR9. Seems to play a role in multiple PHYB responses, such as flowering transition and petiole elongation. {ECO:0000269|PubMed:14668869, ECO:0000269|PubMed:16565297, ECO:0000269|PubMed:16891401}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00052385001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing peaks during the light period. Up-regulated by simulated shade in light-grown plants, in a phytochrome-dependent manner; low red/far-red ratio (R/FR) light, but repressed by a high R/FR light. Rapidly down-regulated after seedling deetiolation. {ECO:0000269|PubMed:14668869, ECO:0000269|PubMed:16565297, ECO:0000269|PubMed:16891401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634195.1 | 0.0 | PREDICTED: transcription factor PIL1 | ||||
Swissprot | Q8L5W8 | 0.0 | PIL1_ARATH; Transcription factor PIL1 | ||||
TrEMBL | A0A078JHW8 | 0.0 | A0A078JHW8_BRANA; BnaC04g52060D protein | ||||
TrEMBL | A0A0D3BNP2 | 0.0 | A0A0D3BNP2_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g006830.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13937 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46970.1 | 1e-177 | phytochrome interacting factor 3-like 1 |
Publications ? help Back to Top | |||
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