PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00052175001 | ||||||||
Common Name | GSBRNA2T00052175001, LOC106364891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28311.2 Da PI: 8.4334 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.1 | 2.7e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRr g+lKKA+ELSvLCdaeva+iifs++gkl+e++s GSBRNA2T00052175001 9 KRIENTINRQVTFAKRRGGVLKKAYELSVLCDAEVALIIFSNRGKLFEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 92.1 | 9.7e-31 | 93 | 175 | 16 | 98 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s+qqe+ kLk++++ Lqr+qR+llGedL++Ls keL++Le+qL++slk+iR +++++l+q+++lq ke++l+++nk+Lr +l GSBRNA2T00052175001 93 SSQQEYLKLKQRYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRGLRTQFMLDQLNDLQSKERMLSDTNKTLRLRL 175 68*****************************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.8E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.198 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-32 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.74E-43 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.839 | 91 | 181 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 7.3E-26 | 94 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRGRVELKR IENTINRQVT FAKRRGGVLK KAYELSVLCD AEVALIIFSN RGKLFEFCSN 60 SSMLKTLERY QKCNYGPPEP NVPSREALAV ELSSQQEYLK LKQRYDALQR TQRNLLGEDL 120 GPLSTKELES LERQLDSSLK QIRGLRTQFM LDQLNDLQSK ERMLSDTNKT LRLRLADGYQ 180 MPFQLNPNQE EVHVDYGHHQ PQQQAFFQPL EYEPIFQMGY HQGQQQDHGM GAGPSANNYM 240 LGWLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 8e-64 | 75 | 178 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 8e-64 | 75 | 178 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 8e-64 | 75 | 178 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 8e-64 | 75 | 178 | 1 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.9372 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in inflorescence development and floral organogenesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00052175001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033157 | 0.0 | BT033157.1 Arabidopsis thaliana unknown protein (At1g24260) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009109825.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X1 | ||||
Refseq | XP_013659830.1 | 0.0 | agamous-like MADS-box protein AGL9 homolog isoform X2 | ||||
Swissprot | O04067 | 1e-157 | AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog | ||||
TrEMBL | A0A078JEY5 | 0.0 | A0A078JEY5_BRANA; BnaAnng21750D protein | ||||
TrEMBL | A0A397YK54 | 0.0 | A0A397YK54_BRACM; Uncharacterized protein | ||||
STRING | Bo3g141410.1 | 1e-180 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6220 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.2 | 1e-146 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106364891 |
Publications ? help Back to Top | |||
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