PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00051887001
Common NameGSBRNA2T00051887001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 95aa    MW: 11170.6 Da    PI: 8.6513
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00051887001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox505e-163401754
                         HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54
                         ++F ++++p++++r +L++klgL  rqVk+WFqNrR++
  GSBRNA2T00051887001  3 TYFSECQHPDKKQRMQLSRKLGLVPRQVKFWFQNRRIQ 40
                         69**********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.0E-4148IPR001356Homeobox domain
PROSITE profilePS5007114.252144IPR001356Homeobox domain
SuperFamilySSF466899.61E-13343IPR009057Homeodomain-like
PfamPF000461.7E-13340IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-14447IPR009057Homeodomain-like
CDDcd000861.56E-10438No hitNo description
PRINTSPR000313.1E-51524IPR000047Helix-turn-helix motif
PRINTSPR000313.1E-52440IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MLTYFSECQH PDKKQRMQLS RKLGLVPRQV KFWFQNRRIQ KAQQERADSS ALKEESDRIR  60
CENTAIREAY EHTICHNCGD APVHDNSYFD AQKL*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}.
UniprotTISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and stamen filament epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00051887001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587672.17e-53PREDICTED: homeobox-leucine zipper protein HDG12-like
SwissprotQ9LMT81e-42HDG12_ARATH; Homeobox-leucine zipper protein HDG12
TrEMBLA0A078H4N33e-65A0A078H4N3_BRANA; BnaC01g36780D protein
TrEMBLA0A0D3ADM93e-65A0A0D3ADM9_BRAOL; Uncharacterized protein
STRINGBo1g131210.15e-66(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17003611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.16e-45homeodomain GLABROUS 12
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  4. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]