PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00051448001
Common NameGSBRNA2T00051448001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 194aa    MW: 21359 Da    PI: 8.2552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00051448001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-1854103255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  GSBRNA2T00051448001  54 SFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFATAEKAARAHDVAALAIKG 103
                          69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.9E-1253103IPR001471AP2/ERF domain
CDDcd000181.63E-3353113No hitNo description
PROSITE profilePS5103222.8454111IPR001471AP2/ERF domain
SMARTSM003807.2E-3954117IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2154112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-3254112IPR001471AP2/ERF domain
PRINTSPR003672.1E-105566IPR001471AP2/ERF domain
PRINTSPR003672.1E-107793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDHSSSSESH PDDCRGVFQD SPAQAMARTV NSNNPKKKRV KKDNDEKAVS KHPSFRGVRM  60
RQWGKWVSEI REPRKKSRIW LGTFATAEKA ARAHDVAALA IKGRSAHLNF PELAYHFPRP  120
ASANPKDIQA AAAAAAAVAV DIEVEKSLPS PAMTAITDDA FSDLPDLLLD VNHKLDGFWD  180
CLPYEEPFFT GSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17501111072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13441PKKKRVKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00051448001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659032.11e-140ethylene-responsive transcription factor ERF038-like
SwissprotQ9ZQP32e-81ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A078H3X81e-140A0A078H3X8_BRANA; BnaC04g44720D protein
TrEMBLA0A3P6D6N71e-140A0A3P6D6N7_BRAOL; Uncharacterized protein
STRINGBo4g184540.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.11e-80ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]