PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00051416001 | ||||||||
Common Name | GSBRNA2T00051416001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 637aa MW: 69281.9 Da PI: 7.0264 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.4 | 1.4e-09 | 354 | 391 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + GSBRNA2T00051416001 354 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 391 554459******************************88 PP | |||||||
2 | BELL | 123.6 | 8e-40 | 213 | 284 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL s+l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi GSBRNA2T00051416001 213 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKLYTSLALKTISRQFRCLKEAIAGQI 284 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 8.7E-76 | 144 | 282 | IPR006563 | POX domain |
Pfam | PF07526 | 3.6E-47 | 150 | 281 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 332 | 395 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 335 | 399 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.11E-12 | 335 | 396 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 336 | 402 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-29 | 338 | 401 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-18 | 352 | 391 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MAAYFHGNPS EISAGTDGGL QTLILMNPTT YVQYTQQDDD SNNNNNSNNN ANNNNSFVFL 60 DSHAPPQNAS QQFVGIPLSG HEAASITAAD NISTPRAQRG LSLSLSSQQQ QQQQQHQTLH 120 HVGFGSGPGE DIRVGPGSTG SGVTNGIANL VSSKYLKAAQ ELLDEVVNAD SKDINTKSQL 180 FSSKKESSTG AGEGSGGGGE ASGKRTVELG TAERQEIQMK KAKLSSMLHE VEQRYRQYHQ 240 QMQMVISSFE QAAGIGSAKL YTSLALKTIS RQFRCLKEAI AGQIKAANKS LGEEDSVSGV 300 GRLEGSRLKF VDHHLRQQRA LQQLGMIQHP SNNAWRPQRG LPERAVSVLR AWLFEHFLHP 360 YPKDSDKHML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YTEEMKEQGK NMGSMEKTLN 420 MDQNNEDSAS KSTSNQEKSP MGGGGGADNY HMNPNHNGDL EGVTGMQGSP KRLRTSEETM 480 MQPINADFSS NEKLTMKILE ERQGLRSDGG YPFMGNFGQY QMDEMSRFEV AVSDQELLAQ 540 RYSGNNNGVS LTLGLPHCDS LSSTHHQGFM QTHHGIPIGR RVKIGEADDY GAAALNGGGG 600 SAATVHSSAA AAAAYNGMNI QNQKRYVAQL LPDFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 7e-17 | 341 | 398 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-17 | 341 | 398 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00051416001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227272 | 0.0 | AK227272.1 Arabidopsis thaliana mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL11-09-C20. | |||
GenBank | AY072175 | 0.0 | AY072175.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | AY096548 | 0.0 | AY096548.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | AY099854 | 0.0 | AY099854.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | BT008422 | 0.0 | BT008422.1 Arabidopsis thaliana At2g35940 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633564.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_013633565.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A078H3W3 | 0.0 | A0A078H3W3_BRANA; BnaC04g44970D protein | ||||
STRING | Bo4g185820.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5008 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 0.0 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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