PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00051079001
Common NameGSBRNA2T00051079001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 265aa    MW: 30116.1 Da    PI: 9.6845
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00051079001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien   rqvtfskRr+g+lKKA+ELSvLCd evavi+fs++gkl+e+ss
  GSBRNA2T00051079001  9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDSEVAVIVFSKSGKLFEFSS 59
                         79***********************************************96 PP
2K-box79.77.2e-278417410100
                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          + +k+e+ ++e++ Lk+ei++Lq+++ +++G++L+ L lkeLq+LeqqL+ sl ++R++K+ ll++q+ee++ ke++++ en++Lr++++
  GSBRNA2T00051079001  84 KPEKQEEDCTEVDLLKNEISKLQEKHLQMQGKGLNALGLKELQHLEQQLNVSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQ 173
                          5578899*********************************************************************************98 PP

                K-box 100 e 100
                          e
  GSBRNA2T00051079001 174 E 174
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.492161IPR002100Transcription factor, MADS-box
CDDcd002656.55E-43276No hitNo description
SuperFamilySSF554554.97E-31274IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.0E-1787172IPR002487Transcription factor, K-box
PROSITE profilePS5129713.17488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD SEVAVIVFSK SGKLFEFSST  60
RMKRTLLRYD NYQRSSDAPL IKYKPEKQEE DCTEVDLLKN EISKLQEKHL QMQGKGLNAL  120
GLKELQHLEQ QLNVSLISVR ERKELLLTKQ LEESRLKEQR AELENETLRR QVQELRSFLP  180
SFNQQYVPSY ITCFAIDPKN SPVNNSGLDD TNYSLQKTNS DTTLQLGLPG EAQARRSEGN  240
RESPSSDSVT TSTTKATPQR INVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-24172172MEF2 CHIMERA
6byy_B6e-24172172MEF2 CHIMERA
6byy_C6e-24172172MEF2 CHIMERA
6byy_D6e-24172172MEF2 CHIMERA
6bz1_A6e-24172172MEF2 CHIMERA
6bz1_B6e-24172172MEF2 CHIMERA
6bz1_C6e-24172172MEF2 CHIMERA
6bz1_D6e-24172172MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.21360.0flower| microspore-derived embryo| seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00051079001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU226810.0U22681.1 Brassica napus AGL15 type 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121726.10.0PREDICTED: agamous-like MADS-box protein AGL15 isoform X1
SwissprotQ392951e-144AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A078JEB90.0A0A078JEB9_BRANA; BnaA10g29830D protein
STRINGBra008802.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-123AGAMOUS-like 15
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]