PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00050921001
Common NameGSBRNA2T00050921001, LOC106345488
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 183aa    MW: 20052.3 Da    PI: 6.0046
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00050921001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-172271255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr +k +g+Wv+eIr+p +   + +++lg+f t+e+Aa a++ a+  ++g
  GSBRNA2T00050921001 22 AYRGVRKRK-WGKWVSEIREPGT---KNHIWLGSFETPEMAATAYDVAAFHFRG 71
                         69****999.**********833...49*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-222180IPR016177DNA-binding domain
CDDcd000185.15E-312181No hitNo description
Gene3DG3DSA:3.30.730.105.7E-312280IPR001471AP2/ERF domain
SMARTSM003801.1E-362285IPR001471AP2/ERF domain
PfamPF008471.1E-102271IPR001471AP2/ERF domain
PROSITE profilePS5103222.8792279IPR001471AP2/ERF domain
PRINTSPR003678.0E-132334IPR001471AP2/ERF domain
PRINTSPR003678.0E-136181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSGHSNSNNN ARSDGQAGIP SAYRGVRKRK WGKWVSEIRE PGTKNHIWLG SFETPEMAAT  60
AYDVAAFHFR GREARLNFPE LASSLPRPVD SSSDSVRMAA HEAALCLRTE PVESAMQLDT  120
SSSSNAGPTM VRLSPREIQA INESTLGSPT MMMHSTYDSM GFGYDTGMNV WDTYLTDSLW  180
DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-162379360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-162379663ATERF1
3gcc_A3e-162379663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00050921001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161621e-149AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161631e-149AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0107641e-149BT010764.1 Arabidopsis thaliana At1g71450 gene, complete cds.
GenBankBT0117901e-149BT011790.1 Arabidopsis thaliana At1g71450 mRNA, complete cds.
GenBankCP0026841e-149CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640144.11e-134ethylene-responsive transcription factor ERF021
SwissprotQ9C9I21e-104ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A078JKI31e-133A0A078JKI3_BRANA; BnaCnng48950D protein
STRINGBo2g072910.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-106ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]