PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00050804001

Common Name

GSBRNA2T00050804001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 507aa MW: 54258.8 Da PI: 7.3552

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00050804001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.9	1.1e-14	88	126	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +kk+CnCk+s+Clk+YCeCfa+g++C+ C+C +C+N+ + GSBRNA2T00050804001 88 KKKHCNCKHSRCLKLYCECFASGTYCDG-CNCLNCFNNVD 126 689***********************.******986 PP
2	TCR	51.3	2.3e-16	172	211	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cs++C+C +CkN e GSBRNA2T00050804001 172 KHHKGCHCKKSGCLKKYCECFQANILCSDNCRCLGCKNFE 211 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.1E-15	87	127	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.61	88	212	IPR005172	CRC domain
Pfam	PF03638	8.6E-11	89	124	IPR005172	CRC domain
SMART	SM01114	7.8E-20	172	213	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	7.4E-13	175	210	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MGEGDDFPPK TEGSEEFDAP TKKTARQLDF AGGHSQANQA PATVAAAAVP MIPPLQSPQV 60 PIRLPKPESP KPKPRPVVVE AGDGTPMKKK HCNCKHSRCL KLYCECFASG TYCDGCNCLN 120 CFNNVDNEPA RREAIESTLE RNPNAFRPKI ASSPHDPRDN REVVGGVVML GKHHKGCHCK 180 KSGCLKKYCE CFQANILCSD NCRCLGCKNF EGSEDRLALF HGEHSHGAAY LQHANAAITG 240 AVGSSGFASS PAPKRRKSQD IFFNQAAKDS SINRLGQGSS GKTTSSKPVA RHGGPSKVVY 300 RSLLADIIQP QDVKALCSVL VAVSEEAAKT STVKRLEDQT ETSLASSAQD NNNGTEIEKA 360 ASGNEAGADE SNSDGSKGKS LSPETLALMC DEQDTMLMVA ASSNCSVEPP NGQDQGYAEK 420 EKIVLTKFRD CLNRIISYAE LKESKCSLSR MDTESPVHAA VKTEPVVQQG EVANGVSQTT 480 IQQPSQLTSS YTQTQQPQAP SEKKDL*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MGEGDDFPPK TEGSEEFDAP TKKTARQLDF AGGHSQANQA PATVAAAAVP MIPPLQSPQV  60
PIRLPKPESP KPKPRPVVVE AGDGTPMKKK HCNCKHSRCL KLYCECFASG TYCDGCNCLN  120
CFNNVDNEPA RREAIESTLE RNPNAFRPKI ASSPHDPRDN REVVGGVVML GKHHKGCHCK  180
KSGCLKKYCE CFQANILCSD NCRCLGCKNF EGSEDRLALF HGEHSHGAAY LQHANAAITG  240
AVGSSGFASS PAPKRRKSQD IFFNQAAKDS SINRLGQGSS GKTTSSKPVA RHGGPSKVVY  300
RSLLADIIQP QDVKALCSVL VAVSEEAAKT STVKRLEDQT ETSLASSAQD NNNGTEIEKA  360
ASGNEAGADE SNSDGSKGKS LSPETLALMC DEQDTMLMVA ASSNCSVEPP NGQDQGYAEK  420
EKIVLTKFRD CLNRIISYAE LKESKCSLSR MDTESPVHAA VKTEPVVQQG EVANGVSQTT  480
IQQPSQLTSS YTQTQQPQAP SEKKDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-30	89	221	11	132	Protein lin-54 homolog
5fd3_B	3e-30	89	221	11	132	Protein lin-54 homolog
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00050804001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018511406.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 6
Swissprot	Q9SL70	0.0	TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBL	A0A078H2G3	0.0	A0A078H2G3_BRANA; BnaA07g00040D protein
STRING	Bra041042.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1783	28	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20110.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]