PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00050615001

Common Name

GSBRNA2T00050615001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 770aa MW: 86074.1 Da PI: 5.5167

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00050615001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	506	556	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ GSBRNA2T00050615001 506 DKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 556 69***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.836	495	576	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-25	508	556	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.09E-21	662	752	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.0E-20	669	745	No hit	No description
SMART	SM00666	3.8E-24	670	753	IPR000270	PB1 domain
PROSITE profile	PS51745	28.257	670	754	IPR000270	PB1 domain
Pfam	PF00564	8.8E-19	671	752	IPR000270	PB1 domain
CDD	cd06407	2.44E-40	671	752	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MEDSYLKTDN AVMDTGFMDG LLLDGCWLET TDGSDFLNLT PFDPSSFIWS PTQDTSALVS 60 HMYGQDCAER SSLEDFQWNK RWWIGPGGGA SSVTERLVQA VEHIRDYTTE RGSLIQLWVP 120 VNRGGKRVLT TKEQPFSHDP LCQRLANYRE ISVNYHFSAE QDDSKALAGL PGRVFLGKLP 180 EWTPDVRFFR SEEYPRVQHA QDCGVRGTLA IPVFEQGSKI CLGVIEVVMT TEMVKLRPEL 240 ESICRALQAV DLRSTEVPIQ PSLKGCDLSY KAALPEIQNL LRCACETHNL PLAQTWVSCL 300 QQTKTGCRHN DENYIHCIST IDDACYVGDP TVLEFHEACS EHHLLKGQGV AGQAFLTNGP 360 CFSTDVSNYK KSEYPLSHHA NMFGLHGAVA IRLRCVHTGS ADFILEFFLP KECDDVEEQR 420 KMLDALSSIM AHVPRSLRTV TDKELEEESE VIVTPKIENT LVFDGGDKPN DVFGLKRGYE 480 YKSSESSMFS CGGFSSMAEK KRTKADKNIT LDVLRQYFAG SLKDAAKSIG VCPTTLKRIC 540 RQHGIQRWPS RKIKKVGHSL QKIQRVIDSV ECVSGPLPIS SFYANFPNLT SHEPSQQDKI 600 SPPLPQPLQL SKSPSSSSSQ CCSSGATTDP SQGDVRTGSS LDETVLTLYS LENNPQGGTH 660 LLSSSQDDDS LRIKVSYGEE KIRFRMRDSR RLTDLLWEIG KRFGLEDMSR YDLKYLDEDN 720 EWVLLTCDED VEECVDVCRT TPSHTTIMLL LHVSSHCFPE RSSATGYSL*

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MEDSYLKTDN AVMDTGFMDG LLLDGCWLET TDGSDFLNLT PFDPSSFIWS PTQDTSALVS  60
HMYGQDCAER SSLEDFQWNK RWWIGPGGGA SSVTERLVQA VEHIRDYTTE RGSLIQLWVP  120
VNRGGKRVLT TKEQPFSHDP LCQRLANYRE ISVNYHFSAE QDDSKALAGL PGRVFLGKLP  180
EWTPDVRFFR SEEYPRVQHA QDCGVRGTLA IPVFEQGSKI CLGVIEVVMT TEMVKLRPEL  240
ESICRALQAV DLRSTEVPIQ PSLKGCDLSY KAALPEIQNL LRCACETHNL PLAQTWVSCL  300
QQTKTGCRHN DENYIHCIST IDDACYVGDP TVLEFHEACS EHHLLKGQGV AGQAFLTNGP  360
CFSTDVSNYK KSEYPLSHHA NMFGLHGAVA IRLRCVHTGS ADFILEFFLP KECDDVEEQR  420
KMLDALSSIM AHVPRSLRTV TDKELEEESE VIVTPKIENT LVFDGGDKPN DVFGLKRGYE  480
YKSSESSMFS CGGFSSMAEK KRTKADKNIT LDVLRQYFAG SLKDAAKSIG VCPTTLKRIC  540
RQHGIQRWPS RKIKKVGHSL QKIQRVIDSV ECVSGPLPIS SFYANFPNLT SHEPSQQDKI  600
SPPLPQPLQL SKSPSSSSSQ CCSSGATTDP SQGDVRTGSS LDETVLTLYS LENNPQGGTH  660
LLSSSQDDDS LRIKVSYGEE KIRFRMRDSR RLTDLLWEIG KRFGLEDMSR YDLKYLDEDN  720
EWVLLTCDED VEECVDVCRT TPSHTTIMLL LHVSSHCFPE RSSATGYSL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.26549	1e-104	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00050615001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY091015	0.0	AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBank	AY117237	0.0	AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013598530.1	0.0	PREDICTED: protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A078H256	0.0	A0A078H256_BRANA; BnaC07g15260D protein
TrEMBL	A0A3P6EMA2	0.0	A0A3P6EMA2_BRAOL; Uncharacterized protein
STRING	Bo7g061470.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]