PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00050349001 | ||||||||
Common Name | GSBRNA2T00050349001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27661.6 Da PI: 9.7599 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.8 | 1.6e-19 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e +s +vt+skRr+g++KKA+EL++LC++e+ v++fs+ k++ + GSBRNA2T00050349001 17 EKDSDLHVTYSKRRQGLFKKASELCTLCGVEIGVLVFSPGRKVFSF 62 5677789********************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.7E-28 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.203 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-24 | 7 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-15 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-22 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-15 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-15 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MARSRKGRQK IQIVKMEKDS DLHVTYSKRR QGLFKKASEL CTLCGVEIGV LVFSPGRKVF 60 SFGNPDVRYV FNRFKSYDQN PFQLNEFGPS ATIRGLNSIL SQELVKLEKE QARRKILEKI 120 RIQREETDKW WEKPPSELNL RQNTCLISVL ENLRMNLGSP RFQQAMVPQN YCGGSNNNIV 180 GGGNTDPLDE RSMFENAFNY NPNMMIPNQG PTLGYNNIKP EVFDPIYNMN WPEYKHGPY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00050349001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013747477.1 | 1e-176 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A078H4H1 | 1e-177 | A0A078H4H1_BRANA; BnaA04g16540D protein | ||||
STRING | Bo4g165540.1 | 1e-166 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16574 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 8e-58 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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