PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00049804001

Common Name

GSBRNA2T00049804001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 289aa MW: 32487.3 Da PI: 5.6061

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00049804001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.4e-18	79	132	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k GSBRNA2T00049804001 79 KKRRLNMEQVKTLEKTFELGNKLEPEMKMQLARALGLQPRQIAIWFQNRRARWK 132 456899***********************************************9 PP
2	HD-ZIP_I/II	128.8	2.2e-41	78	169	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE++Fe +kLepe K++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk+++dalk++ne L++++++L++e GSBRNA2T00049804001 78 EKKRRLNMEQVKTLEKTFELGNKLEPEMKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKQQVDALKADNELLQTHNQKLQAE 167 69**************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 ++ GSBRNA2T00049804001 168 IM 169 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.37E-19	66	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.73	74	134	IPR001356	Homeobox domain
SMART	SM00389	2.2E-18	77	138	IPR001356	Homeobox domain
CDD	cd00086	4.53E-17	79	135	No hit	No description
Pfam	PF00046	1.4E-15	79	132	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-19	86	133	IPR009057	Homeodomain-like
PRINTS	PR00031	4.3E-5	105	114	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	109	132	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.3E-5	114	130	IPR000047	Helix-turn-helix motif
CDD	cd14686	0.00413	127	168	No hit	No description
Pfam	PF02183	6.6E-15	134	176	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009744	Biological Process	response to sucrose
GO:0048826	Biological Process	cotyledon morphogenesis
GO:0080022	Biological Process	primary root development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MSCNNGMSFF PSNFMIQTSY EDDHPHQAPS LAPLLPSCSI PQDLHGFASF LGKRSPIEVG 60 NNMNGEEDYS DDGSHMGEKK RRLNMEQVKT LEKTFELGNK LEPEMKMQLA RALGLQPRQI 120 AIWFQNRRAR WKTKQLEKDY DTLKQQVDAL KADNELLQTH NQKLQAEIMG LKNKEQIESI 180 NLNKETEGSC SNRSDNSSDN LRLDISTALP SVDSTITAGH PPAPQTVGRH FFPPSPAVAT 240 TTTTTMQFFQ NSSSGQSMVK EENSISNMLC AMDDHSGFWP WLDQQQYN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	134	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00225	DAP	Transfer from AT1G69780	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00049804001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353311	0.0	AK353311.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-O11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105645.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13
Refseq	XP_013589953.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13
Refseq	XP_013698957.1	0.0	homeobox-leucine zipper protein ATHB-13
Refseq	XP_013728836.1	0.0	homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	0.0	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A078FFC7	0.0	A0A078FFC7_BRANA; BnaC06g30800D protein
STRING	Bra016266.1-P	0.0	(Brassica rapa)
STRING	Bo6g110380.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2633	27	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]