PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049344001
Common NameGSBRNA2T00049344001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 212aa    MW: 24095.6 Da    PI: 6.3136
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049344001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07547344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          WT  Ed+ + +a  +++ g   +W++Ia  ++  +++ ++++++
  GSBRNA2T00049344001  5 QWTRSEDKMFEQALVLFPEGspnRWERIADQLN--KSAGEVREHY 47
                         7*******************************8..9********9 PP
2Myb_DNA-binding41.53e-1397141347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W++ E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
  GSBRNA2T00049344001  97 PWSENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 141
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.816155IPR017930Myb domain
SMARTSM007173.0E-8253IPR001005SANT/Myb domain
SuperFamilySSF466892.22E-12459IPR009057Homeodomain-like
PfamPF002493.0E-6548IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-4651IPR009057Homeodomain-like
CDDcd001674.66E-6651No hitNo description
PROSITE profilePS5129417.73690146IPR017930Myb domain
SuperFamilySSF466891.08E-1592147IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-1693145IPR006447Myb domain, plants
SMARTSM007171.5E-894144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-1096140IPR009057Homeodomain-like
CDDcd001671.81E-797142No hitNo description
PfamPF002493.6E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MASSQWTRSE DKMFEQALVL FPEGSPNRWE RIADQLNKSA GEVREHYEAL VHDVLEIDSG  60
RVDVPDYMDD SAAGWDSAGQ ISFGSKHGEG ERKRGTPWSE NEHKLFLIGL KRYGKGDWRS  120
ISRNVVVTRT PTQVASHAQK YFLRQNSVKK ERKRSSIHDI TTVDTNLAMP GSNMDWTGQQ  180
ESSQHQQQQS MSEFGQELTP GGHYEEFGYR M*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.37841e-156flower| leaf| microspore-derived embryo| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049344001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653806.11e-153transcription factor DIVARICATA-like
SwissprotQ8S9H77e-56DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A078FDA31e-156A0A078FDA3_BRANA; BnaA03g01420D protein
STRINGBo3g002960.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-119MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]