PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00049301001 | ||||||||
Common Name | GSBRNA2T00049301001, LOC106443004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 25132.4 Da PI: 9.1978 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 78 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+ ql Le+ F+ + +++++++ +L+++lgL+ rq+ vWFqNrRa++k GSBRNA2T00049301001 78 KKKRLTSGQLASLERSFQDEIKLDTDRKLKLSRELGLQPRQIAVWFQNRRARWK 131 45679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.7 | 2.6e-37 | 78 | 168 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+rl++ q+++LE+sF+ e kL+++rK +l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e+++L++ev++Lr+ l GSBRNA2T00049301001 78 KKKRLTSGQLASLERSFQDEIKLDTDRKLKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHEEVKKLRAIL 167 9*****************999******************************************************************876 PP HD-ZIP_I/II 92 k 92 + GSBRNA2T00049301001 168 R 168 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-18 | 67 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.503 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-15 | 77 | 137 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.6E-16 | 78 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.66E-14 | 78 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-19 | 80 | 140 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.2E-5 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.2E-5 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MEWSTTNNLE NMRVAFMLPT WPESSSFNSL HSFNYDPYAA GNSYTPADTQ TGPVISVPET 60 EKIINAYRLP SNNNEITKKK RLTSGQLASL ERSFQDEIKL DTDRKLKLSR ELGLQPRQIA 120 VWFQNRRARW KAKQLEQLYD SLRQEYDVVS REKQMLHEEV KKLRAILRDH GLIKKQISGV 180 TSGEETTEIP SVVATKVYGT DQYNNQMVVA SSCWLPYP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARWKAKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00049301001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232522 | 0.0 | AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013740078.1 | 1e-163 | putative homeobox-leucine zipper protein ATHB-51 isoform X1 | ||||
Swissprot | Q9LZR0 | 1e-125 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A078FE97 | 1e-162 | A0A078FE97_BRANA; BnaA03g01050D protein | ||||
STRING | Bo3g002560.1 | 1e-154 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-128 | homeobox 51 |
Link Out ? help Back to Top | |
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Entrez Gene | 106443004 |
Publications ? help Back to Top | |||
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