PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049249001
Common NameGSBRNA2T00049249001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 277aa    MW: 30456.2 Da    PI: 5.055
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049249001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.7e-133882147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r++WT+ E++++++a +++  + Wk+I   +g  +t  q++s+ qky
  GSBRNA2T00049249001 38 RQSWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 82
                         899*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-163288IPR009057Homeodomain-like
PROSITE profilePS5129415.0673387IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-63588IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-183685IPR006447Myb domain, plants
SMARTSM007177.8E-103785IPR001005SANT/Myb domain
PfamPF002491.2E-103882IPR001005SANT/Myb domain
CDDcd001671.17E-74083No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MTSSLSSNPV ETSTDLTETT TEAPEKKVRK AYTISKSRQS WTEGEHDKFL EALQLFDRDW  60
KKIEDFVGSK TVIQIRSHAQ KYFLKVEKNG TFAHVPPPRP KRKAAHPYPQ KASKNAQMSL  120
HVSMSFPPQI NDVPGYPSWD DDTSALLSIA VSEVILPKDE IDTLFVIELN GSTSAVSPSA  180
SGIGSSSRTL SDSEGLTPVN QAPSMQGLPD FAEVYNFIGS VFDPDSKGRM KKLKEMDPIN  240
FETVLLLMRN LTVNMSNPDF EPSSDAAEEG SEHLSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.117582e-38flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049249001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526240.0AK352624.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-K05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013725115.10.0protein REVEILLE 4-like isoform X1
SwissprotQ6R0G41e-160RVE4_ARATH; Protein REVEILLE 4
TrEMBLA0A078FGP40.0A0A078FGP4_BRANA; BnaA03g00640D protein
STRINGBra005751.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152131118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02840.21e-129LHY/CCA1-like 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]