PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00049089001 | ||||||||
Common Name | GSBRNA2T00049089001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 711aa MW: 77592.4 Da PI: 6.6459 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.3e-19 | 35 | 90 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+ F+++++p+ ++r L+k+lgL rq+k+WFqNrR++ k GSBRNA2T00049089001 35 KKRYHRHTAQQIQRLESSFRECPHPDDKQRNLLSKELGLAPRQIKFWFQNRRTQLK 90 688999**********************************************9877 PP | |||||||
2 | START | 158.6 | 4.7e-50 | 224 | 445 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 +a++a+qel++++ +ep+W+ s e +n + f++s + ++ea+r sg+v+m+++ lv ++d++ +W e ++ + GSBRNA2T00049089001 224 IALTAMQELLRLVHTNEPLWSGSDgcgEVLNLGSYENVFPRSSNrgknhnVRIEASRSSGIVFMNAMSLVDMFMDSA-KWAELFPsivaA 312 6899**********************9667777666667666667778889**************************.*******99999 PP EEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 79 aetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 +tl+v+ssg gal+lm+ e+ +lsplv+ R+f +Ry++q ++g+w++v vS +q+++ +s++ R +pSg+li++++ng GSBRNA2T00049089001 313 SKTLAVVSSGmgggtheGALHLMYEEMEVLSPLVAtREFCELRYCQQIEQGSWIVVNVSYHLPQFVS-HSHSYR---FPSGCLIQDMPNG 398 *******************************************************************.999999...************* PP EEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 161 hskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +skvtwveh++ +++ p +++r +v++g+a+ga +wv tlqr ce+ GSBRNA2T00049089001 399 YSKVTWVEHTETEEKEPvNEMYREMVHKGIAFGAERWVTTLQRMCER 445 *********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-20 | 23 | 94 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.94E-19 | 29 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.524 | 32 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-17 | 33 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.8E-16 | 35 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.90E-18 | 35 | 93 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 67 | 90 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 48.543 | 214 | 448 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.1E-32 | 215 | 447 | No hit | No description |
CDD | cd08875 | 2.29E-101 | 218 | 444 | No hit | No description |
SMART | SM00234 | 1.5E-39 | 223 | 445 | IPR002913 | START domain |
Pfam | PF01852 | 2.8E-43 | 224 | 445 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.1E-7 | 276 | 445 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 9.67E-19 | 464 | 697 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MSFVVGGSGS GGGDGGDGDG GGRQRHDASE TDRKKKRYHR HTAQQIQRLE SSFRECPHPD 60 DKQRNLLSKE LGLAPRQIKF WFQNRRTQLK AQHERADNSA LKAENDKIRC ENIAIREALK 120 HAICPNCGGP PVSEDPYLDE QKLRMENAHL REELERMSTV ASKYMGRPIS SHISTLHPMH 180 ISPLDLSMTS LAGGPSLDFD LLPGSSMSSN FAVSDMDKPI MNDIALTAMQ ELLRLVHTNE 240 PLWSGSDGCG EVLNLGSYEN VFPRSSNRGK NHNVRIEASR SSGIVFMNAM SLVDMFMDSA 300 KWAELFPSIV AASKTLAVVS SGMGGGTHEG ALHLMYEEME VLSPLVATRE FCELRYCQQI 360 EQGSWIVVNV SYHLPQFVSH SHSYRFPSGC LIQDMPNGYS KVTWVEHTET EEKEPVNEMY 420 REMVHKGIAF GAERWVTTLQ RMCERYASLL APAASSLVLV IPSPEGKRSM MRLAHRMVSN 480 YCISVSRSNN TRSTVVAELN EVGVRVTAHK SPEPNGTILS AATTFWLPNS PQNVFNFLKD 540 ERTRPQWDVL SNSNAVQEVA HIANGSHPGC CISVLRASSA SQSNNMLILQ ETSIDSSGAL 600 VVYSPVDLSA LNIAMNGDDT SYIPILSSGF AISPDGNRNS PSAEQGGASS SSGYGGGGSL 660 ITVGFQITVS NLPSAKLNME SVETVNNLIG TTVHQIKTGL NNFPSASTTV * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00049089001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013699248.1 | 0.0 | homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A078FDU6 | 0.0 | A0A078FDU6_BRANA; BnaC06g23610D protein | ||||
STRING | Bo6g087810.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |