PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048934001
Common NameGSBRNA2T00048934001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 377aa    MW: 40849 Da    PI: 6.9805
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048934001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.7e-24144188145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+ep+rC+RtDGKkWRCsr+v++++k+CErH h++r rsrk++e+
  GSBRNA2T00048934001 144 DMEPWRCKRTDGKKWRCSRNVVPDQKYCERHAHKSRPRSRKHVET 188
                          79****************************************997 PP
2QLQ50.85.1e-1879112235
                  QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 
                          aF+ aQ+q+L++Q  ++Ky++a++PvP+eLl + 
  GSBRNA2T00048934001  79 AFSEAQWQELERQRNIFKYMMASLPVPSELLSPF 112
                          8******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.1E-1078114IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.4E-1279111IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.69779114IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.317144188IPR014977WRC domain
PfamPF088791.1E-19145187IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MLPSHHYHSY SSPASASFCY CSNGVADPIF SASNTSTLGE MFSLGGSNST AGVSVADPFF  60
TLTSSGEMGR SMSGKEGAAF SEAQWQELER QRNIFKYMMA SLPVPSELLS PFSRNHTNNH  120
DVTVARGGSL KLGIASNASN NTADMEPWRC KRTDGKKWRC SRNVVPDQKY CERHAHKSRP  180
RSRKHVETPS HSHHNDARTT KNVASQFATA YPQFYGPPLS QFSAVSTLPP ASSSYDHHHS  240
GLRWLMKEGD SIATLNPEIH EAAQLKVGSS RELKRGFEYD LNYIQNDPLV DQRFGALEEG  300
EQDEAMGSSL TLSMAGGGGM EEGEGRSQHQ WISHEGPSWL CSTTPGGPLA EALCLGVSNN  360
PSTSTTTTSS CSRSSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.53750.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot tips and flowers. {ECO:0000269|PubMed:12974814}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048934001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137420.10.0PREDICTED: growth-regulating factor 8-like isoform X2
RefseqXP_018513242.10.0PREDICTED: growth-regulating factor 8-like isoform X1
SwissprotQ9SU441e-176GRF8_ARATH; Growth-regulating factor 8
TrEMBLA0A078FDG40.0A0A078FDG4_BRANA; BnaA03g46480D protein
STRINGBra019244.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.11e-170growth-regulating factor 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]