PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00048926001

Common Name

GSBRNA2T00048926001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 935aa MW: 102676 Da PI: 5.7755

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00048926001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.6e-29	589	640	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ GSBRNA2T00048926001 589 AEKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 640 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	3.38E-5	213	284	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.723	579	660	IPR003035	RWP-RK domain
Pfam	PF02042	7.1E-26	592	640	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.0E-23	828	923	No hit	No description
Pfam	PF00564	4.6E-19	838	919	IPR000270	PB1 domain
SMART	SM00666	1.4E-26	838	920	IPR000270	PB1 domain
PROSITE profile	PS51745	27.911	838	920	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	8.7E-27	838	920	No hit	No description
CDD	cd06407	1.10E-33	839	919	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 935 aa Download sequence Send to blast
MCDPADDDTA RNGVTPPASS RRSREILMDV DDLDLDGSWP LDQIPYLSSA SRMISPIFVS 60 SSSEQPCSPL WAFSDGGVNG NHGGYDGEKI TSASGVSSFR LADYPLFLPY ASSSSVAETT 120 TEKHSSFQFP SPLMSLVPSE NADNYCVIKE RMTQALRYFK ESTEQHVLAQ VWAPVRKNGR 180 DLLTTLGQPF VLNPNGNGLN QYRMISLTYM FSVDSDCDVE LGLPGRVFRQ KLPEWTPNVQ 240 YYSSKEFSRL DHALHYNVRG TLALPVFNPS GESCIGVVEL IMTSEKIHYA PEVDKVCKAL 300 EAVNLKSSEI LDHQTTQICN ESRQNALAEI LEVLTVVCET HNLPLAQTWV PCQHGSVLAN 360 GGGLKKNCTS FDGSCMGQIC MSTTDMACYV VDAHVWGFRD ACLEHHLQKG QGVAGRAFLN 420 GGSCFCRDIT KFCKTQYPLV HYALMFKLTS CFAISLQSSY TGDDSYILEF FLPSTITDDQ 480 EQDSLLGSLL VTMKEHFQSL RVASGVDFGE DDDKLSFEII QALPDKKVHS KIESIRVPFS 540 GFKSNATERL LMPQPAAQSS NPANENVNVA TANGVVKEKK KTEKKRGKAE KTISLDVLQQ 600 YFTGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKIKKV NRSITKLKRV IESVQGTDGG 660 LDLTSMAVSS IPWTNGQTVL NSPSGSKPPE LPNTNHSPNH WSSDHSPQEP NGSPELPSNG 720 HKRSRTGDES AGTPTSHGSC DGNQLDETKV PNQDPLFTVG ASPGLCFPPY SRDHDVSAAS 780 FAIPNRLLGN IDHSRGMPIE DAGSSKDLRN LCSSTPFDDK FPESNWMNND NNSNNNITVT 840 IKASYKEDII RFKISSGSGI MELKDEVAKR LKLDAGTFDI KYLDDDNEWV LIACDVDLQE 900 CLDIPRSSRT NIVRLLVHDV TTNLGSSCES TGEL*

Sequence ? help Back to Top

Protein Sequence Length: 935 aa Download sequence Send to blast

MCDPADDDTA RNGVTPPASS RRSREILMDV DDLDLDGSWP LDQIPYLSSA SRMISPIFVS  60
SSSEQPCSPL WAFSDGGVNG NHGGYDGEKI TSASGVSSFR LADYPLFLPY ASSSSVAETT  120
TEKHSSFQFP SPLMSLVPSE NADNYCVIKE RMTQALRYFK ESTEQHVLAQ VWAPVRKNGR  180
DLLTTLGQPF VLNPNGNGLN QYRMISLTYM FSVDSDCDVE LGLPGRVFRQ KLPEWTPNVQ  240
YYSSKEFSRL DHALHYNVRG TLALPVFNPS GESCIGVVEL IMTSEKIHYA PEVDKVCKAL  300
EAVNLKSSEI LDHQTTQICN ESRQNALAEI LEVLTVVCET HNLPLAQTWV PCQHGSVLAN  360
GGGLKKNCTS FDGSCMGQIC MSTTDMACYV VDAHVWGFRD ACLEHHLQKG QGVAGRAFLN  420
GGSCFCRDIT KFCKTQYPLV HYALMFKLTS CFAISLQSSY TGDDSYILEF FLPSTITDDQ  480
EQDSLLGSLL VTMKEHFQSL RVASGVDFGE DDDKLSFEII QALPDKKVHS KIESIRVPFS  540
GFKSNATERL LMPQPAAQSS NPANENVNVA TANGVVKEKK KTEKKRGKAE KTISLDVLQQ  600
YFTGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKIKKV NRSITKLKRV IESVQGTDGG  660
LDLTSMAVSS IPWTNGQTVL NSPSGSKPPE LPNTNHSPNH WSSDHSPQEP NGSPELPSNG  720
HKRSRTGDES AGTPTSHGSC DGNQLDETKV PNQDPLFTVG ASPGLCFPPY SRDHDVSAAS  780
FAIPNRLLGN IDHSRGMPIE DAGSSKDLRN LCSSTPFDDK FPESNWMNND NNSNNNITVT  840
IKASYKEDII RFKISSGSGI MELKDEVAKR LKLDAGTFDI KYLDDDNEWV LIACDVDLQE  900
CLDIPRSSRT NIVRLLVHDV TTNLGSSCES TGEL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00048926001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228452	0.0	AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBank	BT005776	0.0	BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013737714.1	0.0	protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A078FDC0	0.0	A0A078FDC0_BRANA; BnaA03g46410D protein
STRING	Bra019251.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]