PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048919001
Common NameGSBRNA2T00048919001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 626aa    MW: 70589.7 Da    PI: 6.6174
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048919001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.76.2e-25109210199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv a++L +gD++vF 
  GSBRNA2T00048919001 109 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTAKRLVAGDTFVFL 196
                          88****************************9643..445569************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++el+v+v+r+
  GSBRNA2T00048919001 197 --RGENGELRVGVRRA 210
                          ..449999******97 PP
2Auxin_resp108.28.8e-36235314183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a ha++t+s+F+v+Y+Pr+  s+F+++++k+++a+++k+svG Rfkm+fe+eds+err+sGtvvgv+d+++ +W++S+Wr+L+
  GSBRNA2T00048919001 235 ACHATQTRSMFTVYYKPRT--SQFIISLNKYLEAMSNKFSVGIRFKMRFEGEDSPERRFSGTVVGVKDCST-HWKDSNWRCLE 314
                          6899**************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-43100224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-38102238IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-21107209No hitNo description
PROSITE profilePS5086312.788109211IPR003340B3 DNA binding domain
PfamPF023621.2E-22109210IPR003340B3 DNA binding domain
SMARTSM010191.3E-24109211IPR003340B3 DNA binding domain
PfamPF065072.1E-32235313IPR010525Auxin response factor
PfamPF023099.4E-8488545IPR033389AUX/IAA domain
SuperFamilySSF542771.18E-12504585No hitNo description
PROSITE profilePS5174525.719509601IPR000270PB1 domain
PfamPF023091.8E-6552597IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MYGELWKLCA GPVVDVPQAA ERVFYFPQGH MEQLEASTQQ DLNAVKPTKP LFDLPPKILC  60
RVMDVRLQAE KDTDEVYAQI MLMPEGTVDE PMSPDPSPPE SQRPKVHSFS KVLTASDTST  120
HGGFSVLRKH ATECLPPLDM TQQTPTQELV AEDVHGYQWK FKHIFRGQPR RHLLTTGWST  180
FVTAKRLVAG DTFVFLRGEN GELRVGVRRA NRQQTNMPSS VISSHSMHLG VLATACHATQ  240
TRSMFTVYYK PRTSQFIISL NKYLEAMSNK FSVGIRFKMR FEGEDSPERR FSGTVVGVKD  300
CSTHWKDSNW RCLEVHWDEP ASISRPDKVS PWEIEPFVTS ENVPHSVMPK NKRPRHYSEV  360
SALDVGKTAS NLWSSALTQS HEFAQSCITS QRNSPQQCYR DATEDAKNSD WSASPYSATL  420
NNQMVFPVEQ KKPETTASYR LFGIDLLSSS IPATEEKTAP TLPINITKPT PDSNSDPKSE  480
VSKLSEEKKQ EPAQASSKEV QSKEISSTRS RTKVQMQGVP VGRAVDLTVL NGYSELIDDL  540
EKLFDIEGEL KSRNQWEIVF TDDEGDMMLV GDDPWPEFCN MVKRIFIWSK EEVKKMTPGN  600
QLRKLLTEVD TTLTTTISKT ENHSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-163433722355Auxin response factor 1
4ldw_A1e-163433722355Auxin response factor 1
4ldw_B1e-163433722355Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.218810.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048919001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794740.0JN979474.1 Brassica rapa subsp. pekinensis auxin response factor 9 (ARF9-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137407.10.0PREDICTED: auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A078FFX50.0A0A078FFX5_BRANA; Auxin response factor
STRINGBra019255.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]