PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048902001
Common NameGSBRNA2T00048902001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 297aa    MW: 33019.8 Da    PI: 5.4664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048902001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18107156255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     r  r +lg+f taeeAa  ++ a+ +l+g
  GSBRNA2T00048902001 107 KYRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTFNTAEEAALVYDSAAIQLRG 156
                          8********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-30107164IPR001471AP2/ERF domain
PROSITE profilePS5103223.907107164IPR001471AP2/ERF domain
PfamPF008471.9E-12107156IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21107165IPR016177DNA-binding domain
SMARTSM003801.3E-37107170IPR001471AP2/ERF domain
PRINTSPR003671.0E-10108119IPR001471AP2/ERF domain
CDDcd000181.08E-29110163No hitNo description
PRINTSPR003671.0E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEPEKNLVLP PNIKFTEHKT NTTRTVPGFN NHHLQQPRII RISVTDPDAT DSSSDDDEEE  60
ETHQRFASKR RRIKKFVNEV VVLDSGAAST GSSTQIEPKK RRRKRAKYRG VRQRPWGKWA  120
AEIRDPLRRV RLWLGTFNTA EEAALVYDSA AIQLRGPDAL TNFSVPPPSP VKKKAKIKDD  180
VASSSVSSDI LRSPVSVLRS PFTVDETPAV IVKEEPSTTA SETFSDFSAP LFAEDDLFDF  240
RSDFIAGDLF GEDLFGDTTC TGMNFGFDFG SGLSSWHVED HFQDIGDLFG SDPLAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20104163262ATERF1
3gcc_A6e-20104163262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16872KRRRI
297104PKKRRRKR
398103KKRRRK
498104KKRRRKR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048902001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0353944e-39AL035394.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F9D16 (ESSAII project).
GenBankAL1615604e-39AL161560.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60.
GenBankAY0574754e-39AY057475.1 Arabidopsis thaliana AT4g23750/F9D16_220 mRNA, complete cds.
GenBankAY1400494e-39AY140049.1 Arabidopsis thaliana putative Ap2 domain protein (At4g23750) mRNA, complete cds.
GenBankBT0150384e-39BT015038.1 Arabidopsis thaliana At4g23750 gene, complete cds.
GenBankCP0026874e-39CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankEF1978464e-39EF197846.1 Arabidopsis halleri miR319a microRNA locus, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137389.10.0PREDICTED: ethylene-responsive transcription factor CRF2
RefseqXP_013735062.10.0ethylene-responsive transcription factor CRF2
SwissprotQ9SUQ21e-128CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A078F9040.0A0A078F904_BRANA; BnaA03g46240D protein
STRINGBra019270.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-108cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  5. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  6. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]