PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048644001
Common NameGSBRNA2T00048644001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 372aa    MW: 41621.1 Da    PI: 6.6365
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048644001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-10182240563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  l+     l+ e+
  GSBRNA2T00048644001 182 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVEN 240
                          9********************************************99998887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.2E-15178242IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.565180243IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-9182236No hitNo description
SuperFamilySSF579591.9E-10182233No hitNo description
PfamPF001706.1E-9182234IPR004827Basic-leucine zipper domain
CDDcd147031.17E-20183232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEREKSPAPS GGLPPPSPTP INHSSDANRL SHDMSRMLEH PPKKIGHRRA HSEILTLPDD  60
LSFDSDLGVV GTNAADGASF SDDTEEDLLS MYLDMDKFNS STATSSAAAQ VGEPSWRNES  120
VGMHTGLTSN PPRVRHQHSH SMDGSLNISE MLVSGEGDDS VVDAKKSMSA AKLAELALID  180
PKRAKRIWAN RQSAARSKER KTRYIFELER KVQTLQTEAT TLSAQLTLLQ RDTNGLTVEN  240
NELKLRLQTM EQQVHLQDEL NEALKEEIQH LKVLTGQAAS NGASAVNYGS FGQQQQQQFY  300
SNNQSMQTIL AAQQLQQLQL HSQKQQQHQQ QQQQQQFQFQ QQQIQQLMQH RLRQQEQQNG  360
KQKPFNGQNE S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.116490.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048644001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532830.0AK353283.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-D07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144214.20.0PREDICTED: LOW QUALITY PROTEIN: probable transcription factor PosF21
SwissprotQ040880.0POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A078FCZ60.0A0A078FCZ6_BRANA; BnaA05g11370D protein
STRINGBra018250.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31370.51e-139bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]