PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00048597001 | ||||||||
Common Name | GSBRNA2T00048597001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 347aa MW: 38395.1 Da PI: 6.9347 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.5 | 1.2e-34 | 26 | 126 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 a+g+kdrhsk+ T++g+RdRRvRl a++a++f+d+qd+L +d++sk+++WL+++ak+ai++l t+ ++++++ +++ssss+ + + GSBRNA2T00048597001 26 ATGRKDRHSKVFTSKGPRDRRVRLAAHTAIQFYDVQDRLQYDRPSKAVDWLIKKAKAAIDKLETTQEPPENDTtKPGSSSSEPN-LADTq 114 589**************************************************************9***999964444444444.11112 PP TCP 89 ...........k 89 + GSBRNA2T00048597001 115 thfvaanldpeD 126 334445444431 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-30 | 27 | 135 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.346 | 29 | 87 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGLKGYSAGD GVGEIIEVPG GHIIRATGRK DRHSKVFTSK GPRDRRVRLA AHTAIQFYDV 60 QDRLQYDRPS KAVDWLIKKA KAAIDKLETT QEPPENDTTK PGSSSSEPNL ADTQTHFVAA 120 NLDPEDAMKT FFPATTRGGG TNMNFQNYPH HHDADNIVSR TTTTTPNLSQ DLGLSLHPFQ 180 GNNINSTVVP ETNNFATAHF ETFGRISGWN HHDLTMTSSS SPSEQQEEQE RGNGGFMVNL 240 HHHQPSMMTL LNSQQQQVFL GGQQQQQRGT LQSSLFPHSF RSWDHHHQTT SDNHHHHHNQ 300 ASPVMFASSS QYGSHGMMMM QGLSFPIHGE EPTQPNSSSS PPNSHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 34 | 87 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 34 | 87 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in the distal and middle regions of cotyledons of heart-shaped embryos. Later localized in bending cotyledon, and mature embryos, but no signals were detected in the presumptive shoot apical meristem (SAM) and the boundary region during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly detected in lateral organs, such as leaves and flowers. Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and immature siliques. {ECO:0000269|PubMed:11158442, ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00048597001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013732230.1 | 0.0 | transcription factor TCP10-like | ||||
Refseq | XP_013732231.1 | 0.0 | transcription factor TCP10-like | ||||
Refseq | XP_022568818.1 | 0.0 | transcription factor TCP10-like | ||||
Swissprot | O82277 | 1e-147 | TCP10_ARATH; Transcription factor TCP10 | ||||
TrEMBL | A0A078FCP6 | 0.0 | A0A078FCP6_BRANA; BnaA05g11640D protein | ||||
STRING | Bo4g053680.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14158 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 1e-128 | TCP domain protein 10 |
Publications ? help Back to Top | |||
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