PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048183001
Common NameGSBRNA2T00048183001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 271aa    MW: 29781.7 Da    PI: 10.5578
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048183001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind2371.4e-7290270117301
            GAGA_bind 117 pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDe 205
                          pq e+    +  + +l  +p++   ++++   k+++  +++k++++k ++kk+  +++k  +k+ s  ++ k+ekk+ d+ v++  s+D 
  GSBRNA2T00048183001  90 PQAEPAELAVVPQVHLFPPPTRGYIHDVE--LKSSTMLSPSKALKPKPQSKKR--SAPKTPKKTLSI-PEIKREKKNPDInVVDISSFDV 174
                          55555555555555555555444333332..2333345667777777777766..444444444444.689*********889999**** PP

            GAGA_bind 206 stlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtn 295
                          s++P+PvCsCtG++++CYkWG+GGWqS+CCt++iS++PLP+st+r+g+R+agrKmS+ga+ klL + a+eGydl +pvDL++hWA+HGtn
  GSBRNA2T00048183001 175 SGVPPPVCSCTGVPKVCYKWGMGGWQSSCCTISISTFPLPMSTTRPGTRLAGRKMSNGAYVKLLMRHAGEGYDLTCPVDLRNHWARHGTN 264
                          ****************************************************************************************** PP

            GAGA_bind 296 kfvtir 301
                          kfvti+
  GSBRNA2T00048183001 265 KFVTIK 270
                          *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.4E-7719270IPR010409GAGA-binding transcriptional activator
PfamPF062176.2E-64119270IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGLAISFVIS SGFAKFHSND SRKIKKKLFR EGAILPLKQA IEMDPYLSRN HMKPATSTSK  60
DTGLPTSNPL WFHSYFPVPR TTGIDLSQPP QAEPAELAVV PQVHLFPPPT RGYIHDVELK  120
SSTMLSPSKA LKPKPQSKKR SAPKTPKKTL SIPEIKREKK NPDINVVDIS SFDVSGVPPP  180
VCSCTGVPKV CYKWGMGGWQ SSCCTISIST FPLPMSTTRP GTRLAGRKMS NGAYVKLLMR  240
HAGEGYDLTC PVDLRNHWAR HGTNKFVTIK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.83790.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in anthers, in pollen grains, in young rosette, in leaf vasculature, in the lateral and primary roots, in embryo sac, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048183001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513635.10.0PREDICTED: protein BASIC PENTACYSTEINE7 isoform X2
SwissprotO822861e-110BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A078JDV90.0A0A078JDV9_BRANA; BnaA03g56400D protein
STRINGBra023013.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.11e-128basic pentacysteine 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]