PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048064001
Common NameGSBRNA2T00048064001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 459aa    MW: 50794.6 Da    PI: 7.3066
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048064001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.82.4e-1483121241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          ++k+CnCk+skClk+YCeCfa+g++C+  C+C +C+N+ e
  GSBRNA2T00048064001  83 KQKHCNCKNSKCLKLYCECFASGSYCNG-CNCLNCQNNLE 121
                          79**************************.********977 PP
2TCR51.51.9e-16167206140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeC++a++ Cse+CkC+dCkN e
  GSBRNA2T00048064001 167 KHSKGCHCKKSGCLKKYCECYQANVLCSENCKCQDCKNFE 206
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.6E-1682122IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.64183207IPR005172CRC domain
PfamPF036387.7E-1184119IPR005172CRC domain
SMARTSM011144.4E-19167208IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.3E-13170205IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDCEKNHPPH SLLDSNSSRE DHKKEDLLPP PPPSGSEEQV VKSLKPPVRS ELSTPPQRPP  60
LNGFDHESAK CRVSKQEPLT PSKQKHCNCK NSKCLKLYCE CFASGSYCNG CNCLNCQNNL  120
ENETARQEAI TGTLERNPDA FKPKIAGSPL GTNDLQEDVR QLLILGKHSK GCHCKKSGCL  180
KKYCECYQAN VLCSENCKCQ DCKNFEGSQE RNALLYGPET YTQQQQTTNA ALNRAVATSG  240
YLNPLESRKR KSKEASHSAG GSSAFPHLIR NGDTSLFSVP NNRVVSGFTS CSYRSSLSNS  300
IQPRHVKDLC ALLVTRSVDV ANKRRKNEKD SSLDPALIDA NETNDSPDCV LDSTRMDEKP  360
LSPATRALMC DDEDVIISEK ETSAARVKTS QEKEDADTSS ESFVEQERQI LSSFRDFLIQ  420
FSNRGNIKAG MNIKTKTDQS RKEPPEDEEQ RNQHSGLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-328421611132Protein lin-54 homolog
5fd3_B1e-328421611132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048064001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728830.0AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
GenBankAC1893210.0AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022565924.10.0protein tesmin/TSO1-like CXC 7
SwissprotF4JY840.0TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLA0A3P6DP320.0A0A3P6DP32_BRAOL; Uncharacterized protein (Fragment)
STRINGBra036551.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.11e-168Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]