PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00047945001 | ||||||||
Common Name | GSBRNA2T00047945001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 1673aa MW: 187643 Da PI: 5.1864 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.5 | 9.8e-18 | 42 | 98 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ ql++Le++++ + yps+++r+eL++kl+L++rq ++WF+ rR k+kk GSBRNA2T00047945001 42 PKRQMKTPFQLQTLEQVYAAeETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK 98 69*****************88**********************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-15 | 21 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.37E-14 | 33 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.791 | 38 | 99 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-16 | 40 | 103 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-15 | 42 | 98 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.18E-13 | 43 | 98 | No hit | No description |
PROSITE profile | PS50827 | 18.031 | 534 | 593 | IPR018501 | DDT domain |
SMART | SM00571 | 1.8E-24 | 534 | 593 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.9E-18 | 535 | 590 | IPR018501 | DDT domain |
Pfam | PF05066 | 4.2E-15 | 718 | 785 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 9.0E-6 | 925 | 964 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 3.8E-13 | 1075 | 1147 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1673 aa Download sequence Send to blast |
MEMGSDGEED QIRSVADSNH KNKKMKKVVD ASNSKDSPSS KPKRQMKTPF QLQTLEQVYA 60 AEETYPSEAT RAELSEKLDL SDRQLQMWFC HRRLKDKKDG QVKKTPKPSP VQPASAVPAL 120 YLPAAELDSG SDSGSGRSPY SDPRREFASG SSNSPAEYET MGSAGYEPPR SSVMVRRAVA 180 CIEAQLGEPL RDDGPILGME FDPLPPGAFG TPIAMQTHQG HPYESKMYEP HDVRPRRSQA 240 ATSSFHDQQS LNDPSSFTPD MYGRYSESHA RGVDYEISRP RSSSFMQGNG PLPKSYGNSS 300 RNCSTSQQDM PSPILPSARG DSFLLERDSS GLRAEDPYLL SDGVRMSNDV HRKGKINDGR 360 LGRGSGQKDL EKLELQRKRN EERMRKEMER YERERRKEEE RLMRERIKEE ERLQREQRRE 420 MERRERFLQR ENERAEKNKQ KEEIRREKEA IRRKIAVEKA TARRIAKEAM DLIEDEQLEL 480 MDLAASSKGL SSVIQLDHET LQNLDLYRDS LSTFPPKALQ LKMPFTISPW KDSEENVGNL 540 LMVWRFLISF SDVLDLWPFT LDEFIQALHD YDSRLLGEIH ITLLRSIIRD IEDVARTPYS 600 GIGNNQYTTA NPEGGHPQIV EGAYAWGFDI RSWKKHLNPL TWPEILRQLG LSSGFGPRLK 660 KNNSRVTHTG EKDELQAKGC EDIISTLRSG SAAESAFASM LEKGLLAPRK SRHRLTPGTV 720 KFAAFHVLSL EGSKGLTVIE LADKIQKSGL RDLRTSKTPE ASISVALTRD VKLFERIAPS 780 TYCVRAPYVK DPADGEAILS EARKKIKAFE NGLAGPEDVN DLEKDEDFEC DIDEDPEVDD 840 LATLPSASKS ADLGEANGLS GKGGEIMFSD VKANVKSEVE KEVSSPPTSS MKTIVPQCHS 900 EQGKDAAVSC MDNKNAVVED IKQGKSWVLG LTEGDYCHLS VKERLEALVA LVGIANEGNS 960 IRANLEDRLE AANSLKKQMW AEAQLDNSCM RDVLKFDIQH STREIDGFNR DPSQLVDETK 1020 PPLEVVSNDV HKLSTERGSV NQEGNISQEN CSSKRSRSQL KSYISHKAEE VYPYRSLPLG 1080 QDRRHNRYWH FAASASKSDP CSGLIFVELH DSKWRLIDSA EAFDTLVASL DMRGVRESHL 1140 RIMLQKIEGA FKENACKKIN LVRNPSLKED SVSPFSAILG SSSDSMGVST SVRVELGRRN 1200 DKEKENLLKR FHSFQRWMWT ETYSSVPSCA RKDGKKRCEL LATCEVCVAS YLSEYTHCTS 1260 CHQRLDMADS SERKIADSGL TASPLPFGVR LLKALLVFLE ASVPDEAYES FWTEEKRKNW 1320 GFRLNASSSP EEFLQVLTYL ESAIKKESLS SNFLSAKELL GAAGATADPG SVDVFLWIPK 1380 TVSAVALRLS DLDASIVYVK PEKPEPVPED EKEQISLFPG NSLLKGKGPK EQEDQDEVVP 1440 NSGKKSSKRR VIFGSGSNKK AKKKKVQGGN GRFVAGRSNV AVNRNIMSVE LNHQVPGRGK 1500 RTVRKRPERN DEDNYRLVSR MADIVKPTSE EDEEEQTFRG IDQDWAGETP GEMDEEWASE 1560 TPNRVMTPMQ VDGESDDNSV GVQSEDDDDE GQFVSYSQRN KWGFDWNSNP NEAMEDVEEE 1620 EVAGVEQVQR EYVAEMSESS EDEEDDDLPA PSNNAAANNY DRESEDYSSS DS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 91 | 98 | RRLKDKKD |
2 | 1447 | 1464 | KRRVIFGSGSNKKAKKKK |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00047945001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013731407.1 | 0.0 | homeobox-DDT domain protein RLT1-like isoform X1 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A078JIR0 | 0.0 | A0A078JIR0_BRANA; BnaC05g51140D protein | ||||
STRING | Bo5g055970.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8347 | 22 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |
Publications ? help Back to Top | |||
---|---|---|---|
|