PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047945001
Common NameGSBRNA2T00047945001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 1673aa    MW: 187643 Da    PI: 5.1864
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047945001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.8e-184298257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                          kR+  t+ ql++Le++++  + yps+++r+eL++kl+L++rq ++WF+ rR k+kk
  GSBRNA2T00047945001 42 PKRQMKTPFQLQTLEQVYAAeETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK 98
                         69*****************88**********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-152198IPR009057Homeodomain-like
SuperFamilySSF466891.37E-143398IPR009057Homeodomain-like
PROSITE profilePS5007115.7913899IPR001356Homeobox domain
SMARTSM003891.6E-1640103IPR001356Homeobox domain
PfamPF000462.0E-154298IPR001356Homeobox domain
CDDcd000866.18E-134398No hitNo description
PROSITE profilePS5082718.031534593IPR018501DDT domain
SMARTSM005711.8E-24534593IPR018501DDT domain
PfamPF027911.9E-18535590IPR018501DDT domain
PfamPF050664.2E-15718785IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156129.0E-6925964IPR028942WHIM1 domain
PfamPF156133.8E-1310751147IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1673 aa     Download sequence    Send to blast
MEMGSDGEED QIRSVADSNH KNKKMKKVVD ASNSKDSPSS KPKRQMKTPF QLQTLEQVYA  60
AEETYPSEAT RAELSEKLDL SDRQLQMWFC HRRLKDKKDG QVKKTPKPSP VQPASAVPAL  120
YLPAAELDSG SDSGSGRSPY SDPRREFASG SSNSPAEYET MGSAGYEPPR SSVMVRRAVA  180
CIEAQLGEPL RDDGPILGME FDPLPPGAFG TPIAMQTHQG HPYESKMYEP HDVRPRRSQA  240
ATSSFHDQQS LNDPSSFTPD MYGRYSESHA RGVDYEISRP RSSSFMQGNG PLPKSYGNSS  300
RNCSTSQQDM PSPILPSARG DSFLLERDSS GLRAEDPYLL SDGVRMSNDV HRKGKINDGR  360
LGRGSGQKDL EKLELQRKRN EERMRKEMER YERERRKEEE RLMRERIKEE ERLQREQRRE  420
MERRERFLQR ENERAEKNKQ KEEIRREKEA IRRKIAVEKA TARRIAKEAM DLIEDEQLEL  480
MDLAASSKGL SSVIQLDHET LQNLDLYRDS LSTFPPKALQ LKMPFTISPW KDSEENVGNL  540
LMVWRFLISF SDVLDLWPFT LDEFIQALHD YDSRLLGEIH ITLLRSIIRD IEDVARTPYS  600
GIGNNQYTTA NPEGGHPQIV EGAYAWGFDI RSWKKHLNPL TWPEILRQLG LSSGFGPRLK  660
KNNSRVTHTG EKDELQAKGC EDIISTLRSG SAAESAFASM LEKGLLAPRK SRHRLTPGTV  720
KFAAFHVLSL EGSKGLTVIE LADKIQKSGL RDLRTSKTPE ASISVALTRD VKLFERIAPS  780
TYCVRAPYVK DPADGEAILS EARKKIKAFE NGLAGPEDVN DLEKDEDFEC DIDEDPEVDD  840
LATLPSASKS ADLGEANGLS GKGGEIMFSD VKANVKSEVE KEVSSPPTSS MKTIVPQCHS  900
EQGKDAAVSC MDNKNAVVED IKQGKSWVLG LTEGDYCHLS VKERLEALVA LVGIANEGNS  960
IRANLEDRLE AANSLKKQMW AEAQLDNSCM RDVLKFDIQH STREIDGFNR DPSQLVDETK  1020
PPLEVVSNDV HKLSTERGSV NQEGNISQEN CSSKRSRSQL KSYISHKAEE VYPYRSLPLG  1080
QDRRHNRYWH FAASASKSDP CSGLIFVELH DSKWRLIDSA EAFDTLVASL DMRGVRESHL  1140
RIMLQKIEGA FKENACKKIN LVRNPSLKED SVSPFSAILG SSSDSMGVST SVRVELGRRN  1200
DKEKENLLKR FHSFQRWMWT ETYSSVPSCA RKDGKKRCEL LATCEVCVAS YLSEYTHCTS  1260
CHQRLDMADS SERKIADSGL TASPLPFGVR LLKALLVFLE ASVPDEAYES FWTEEKRKNW  1320
GFRLNASSSP EEFLQVLTYL ESAIKKESLS SNFLSAKELL GAAGATADPG SVDVFLWIPK  1380
TVSAVALRLS DLDASIVYVK PEKPEPVPED EKEQISLFPG NSLLKGKGPK EQEDQDEVVP  1440
NSGKKSSKRR VIFGSGSNKK AKKKKVQGGN GRFVAGRSNV AVNRNIMSVE LNHQVPGRGK  1500
RTVRKRPERN DEDNYRLVSR MADIVKPTSE EDEEEQTFRG IDQDWAGETP GEMDEEWASE  1560
TPNRVMTPMQ VDGESDDNSV GVQSEDDDDE GQFVSYSQRN KWGFDWNSNP NEAMEDVEEE  1620
EVAGVEQVQR EYVAEMSESS EDEEDDDLPA PSNNAAANNY DRESEDYSSS DS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19198RRLKDKKD
214471464KRRVIFGSGSNKKAKKKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047945001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731407.10.0homeobox-DDT domain protein RLT1-like isoform X1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A078JIR00.0A0A078JIR0_BRANA; BnaC05g51140D protein
STRINGBo5g055970.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83472236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]