PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047925001
Common NameGSBRNA2T00047925001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 351aa    MW: 39882.6 Da    PI: 9.5345
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047925001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-1324951393
                         TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3 13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                         s  + +p  f ++h +g ++e   ++l++  s  +Wevk+  ++++    lt+GW++F+  +  ++gD+v+F++dg+  f  +
  GSBRNA2T00047925001 24 S-HINIPVAFYSKHiKGTTNE--VVKLRSdASDLTWEVKM--DGRR----LTQGWEKFATGHAFQVGDIVIFRHDGDLLF--H 95
                         4.489*********7666444..6888776899*******..9998....***********************8875333..4 PP
2B364.31.8e-20134226397
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           + +++++lk++ l lp +f +++g +++e  +++l +e+g+ W++ ++y k+sg++++++GW +F++an+ +++D+++Fkl++ +++++
  GSBRNA2T00047925001 134 VARVTESNLKKDALFLPQHFSRSNGFVNRE-CEIILLNEDGEPWTLLMKYYKTSGHVYIRRGWISFCQANRKRANDVLTFKLVQ-TGRKP 221
                          56689999****************888655.59*************************************************98.77778 PP

                          EEEEE CS
                   B3  93 vvkvf 97 
                          v++++
  GSBRNA2T00047925001 222 VLQLR 226
                          88876 PP
3B336.68.3e-12246334190
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                          f++ +++ ++lks+ l+lp  f+ ++g+k+ +  +++l d+ g + +  l+ + k gr+ l++G  +F+ a g+k+g+++ ++l+++ +e
  GSBRNA2T00047925001 246 FVTLTLKQYHLKSCKLSLPVAFVMANGIKNVR--KIILVDRYGVRRTTSLKPDDKYGRMRLGQGCIKFCVASGVKAGESFRLELIKEkEE 333
                          67778899******************999666..8********999999988999999**************************987444 PP

                          E CS
                   B3  90 f 90 
                           
  GSBRNA2T00047925001 334 D 334
                          3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-186104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-1711109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.15211102IPR003340B3 DNA binding domain
CDDcd100175.67E-141299No hitNo description
SMARTSM010196.6E-1814102IPR003340B3 DNA binding domain
PfamPF023622.1E-82591IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-20126228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-22127229IPR015300DNA-binding pseudobarrel domain
CDDcd100177.81E-21132226No hitNo description
PROSITE profilePS5086313.93132228IPR003340B3 DNA binding domain
SMARTSM010194.4E-25132229IPR003340B3 DNA binding domain
PfamPF023623.6E-19134226IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-13240343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-13243332IPR015300DNA-binding pseudobarrel domain
CDDcd100179.97E-12245333No hitNo description
PROSITE profilePS508637.697246345IPR003340B3 DNA binding domain
PfamPF023623.6E-10246334IPR003340B3 DNA binding domain
SMARTSM010191.2E-13246346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAHGSASSAI NPHFLQPLLP GFHSHINIPV AFYSKHIKGT TNEVVKLRSD ASDLTWEVKM  60
DGRRLTQGWE KFATGHAFQV GDIVIFRHDG DLLFHVTPFG PSCCEIQYND DDDEKYHQQH  120
TREAGSSSDN SCFVARVTES NLKKDALFLP QHFSRSNGFV NRECEIILLN EDGEPWTLLM  180
KYYKTSGHVY IRRGWISFCQ ANRKRANDVL TFKLVQTGRK PVLQLRASVY NNRASTSFSS  240
TSQDRFVTLT LKQYHLKSCK LSLPVAFVMA NGIKNVRKII LVDRYGVRRT TSLKPDDKYG  300
RMRLGQGCIK FCVASGVKAG ESFRLELIKE KEEDTVNHLL KFCYTVLYSL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047925001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894311e-134AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624170.10.0PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A078JJX00.0A0A078JJX0_BRANA; BnaC03g73290D protein
STRINGBo3g063950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.18e-90B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]